EY661478

Overview
NameEY661478
Unique NameEY661478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2297 contig Csv1_Contig2297:227..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_MESSB (Elongation factor Ts OS=Mesorhizobium sp. (strain BNC1) GN=tsf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.307e-29
Identity = 82/221 (37.10%), Postives = 119/221 (53.85%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKSFV 758
            L+KQLRE T A M D K AL +   D+EAA+  LRK+G   A KK+ RTA EGL+ LA + + A  +E+N ETDFV+RN+ FQ             + NV    +  +P                  G   +V +A+ +  A +GEN+ LRR   LS S  G V+TY+H S   GLG+I   +++E E  +   +  +  G ++AMH+ A NPL L+++ V
Sbjct:    7 LVKQLREVTGAGMMDCKTALAETGGDLEAAVDWLRKKGISKADKKAGRTAAEGLIGLAADATSAVAVEVNSETDFVARNDAFQELVRNIAQVALGTDGNVEAVSAASYP------------------GSGKSVADAVRDAIATIGENMALRRSAKLSVSK-GAVATYVHNSVSEGLGKIGVLVAIETEGNA---EAARNFGRQVAMHVAATNPLALSEAEV 205          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_MAGSA (Elongation factor Ts OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tsf PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.319e-29
Identity = 84/221 (38.01%), Postives = 125/221 (56.56%), Query Frame = 3
Query:   96 NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKSFV 758
            +L+K+LRE+T A M D K AL +   D+EAA+  LRK+G   A+KK+ R A EGL+ +A   +K   +E+N ETDFV+RN+ FQ               V+   +     G + +E +K        G +  V + +T + A +GEN+ LRR   L  S+ GVV++Y+HT+   GLG+I   ++LE    + + D L  VG ++AMH+ A NPLFL  S V
Sbjct:    7 SLVKELREKTGAGMMDCKKALGETAGDVEAAIDWLRKKGLAAAAKKAGRVAAEGLVGIAAAGTKGVAVEVNAETDFVARNDQFQGF-------------VASVAAVALDKGAD-VEAIKAAACP---GTDKNVADQLTHLIATIGENMSLRRAVRLEVSA-GVVASYVHTAIAPGLGKIGCLVALE---STGNVDRLNEVGKQIAMHVAAANPLFLDPSVV 206          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_METNO (Elongation factor Ts OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=tsf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.621e-29
Identity = 85/215 (39.53%), Postives = 118/215 (54.88%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFL 743
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AAV+E+N ETDFV+RN+ FQ             E            G E LE           G +TTV++ + E+ A +GEN+ LRR   L+    GV++TY+H+    GLG+I   ++LE  DG   F  L  +G ++AMH+ A NPL L
Sbjct:    8 MVKDLREKTGAGMMDCKSALNETAGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAAVVEVNSETDFVARNDSFQAFVREAAKVALNAEG-----------GVEALEAAHFP------GSQTTVKDRLQELIATIGENMTLRRTAKLTVEK-GVIATYVHSQVSEGLGKIGVLVALE-SDGDVGF--LSTLGRQIAMHVAATNPLAL 201          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_GRABC (Elongation factor Ts OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tsf PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.799e-28
Identity = 81/212 (38.21%), Postives = 121/212 (57.08%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNP 734
            L+K+LRE T A M D K AL + + D+EAA+  LRK+G   A+KKS R A EGL+ +A     AA++E+N ETDFV+RNE+FQ               V++       VG E +E +K     P  G E TV   +T + A +GEN+ +RR  +LS    GVV++Y+H+  + GLG+I   +++E    +S    L+ +G ++ M + A NP
Sbjct:    8 LVKELRETTGAGMMDCKKALSETNGDLEAAIDWLRKKGLSAAAKKSGRVAAEGLVGVASAPQTAAMVEVNAETDFVARNELFQAF-------------VTETARVALTVG-EDVEAIKA---APYPGTERTVAEQLTHLVATIGENMNIRRARVLSVPQ-GVVASYIHSPVKPGLGKIGVLVAVE---SASEISALETLGRQVGMQVAAANP 198          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHORT (Elongation factor Ts OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.656e-28
Identity = 84/217 (38.71%), Postives = 125/217 (57.60%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGE-TTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLK--RVGIKLAMHIVAQNPLF 740
            L+K LREQT A M D K AL +   D+EAA+  LRK+G   A+KK+ RTA+EGL+ +A   +  AV+E+N ETDFV+RN+ FQ                 +  + L       +E LK +  +P  GGE  TV+  +T + A +GEN++LRR   L     GVV++Y+HT+ + GLG+I   ++L+     S+ DP K   +G ++AMH+ A  P +
Sbjct:    8 LVKSLREQTGAGMMDCKKALTETAGDVEAAIDWLRKKGLAAAAKKAGRTASEGLVGIATAGTAGAVVEVNAETDFVARNDTFQ--------------GFVETVASLTLAAKGDIEALK-SAAYP--GGEGRTVEAQVTHLIATIGENMQLRRSAALEVEQ-GVVTSYMHTAVKPGLGKIGVLVALK-----SAADPAKLDELGRQIAMHVAAAQPRY 201          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHIME (Elongation factor Ts OS=Rhizobium meliloti GN=tsf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.145e-28
Identity = 77/218 (35.32%), Postives = 119/218 (54.59%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A + +KA V+E+N ETDFV+RN+ FQ                   G     +G +          +P  G   +V++ I +  A +GEN+ LRR  LL     GVV+TY+H +   G+G++   ++L+    +   + L  +G ++AMH+ A NPL +  S
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASSGTKAVVVEINSETDFVARNDAFQELVR---------------GVANVALGTDGSVAAVSKATYPATG--KSVEDTIKDAIATIGENMTLRRSALLEVED-GVVATYVHNAAGEGIGKLGVLVALK---STGDKEALNAIGRQVAMHVAATNPLAVRSS 203          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_METS4 (Elongation factor Ts OS=Methylobacterium sp. (strain 4-46) GN=tsf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.145e-28
Identity = 83/219 (37.90%), Postives = 120/219 (54.79%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQ-YXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K LRE+T A M D K AL +   DIEAA+  LRK+G   A+KK+ R A EGL+A+      AA++E+N ETDFV+RN+ FQ +             NV    +  FP                  G +TTV++ + E+ A +GEN+ LRR   L A S GV++TY+H     GLG+I   ++LE    + + + L  +G ++AMH+ A NPL L  S
Sbjct:    8 MVKDLREKTGAGMMDCKSALNETAGDIEAAVDWLRKKGLAKAAKKAGRVAAEGLVAVESAGRHAALVEVNSETDFVARNDGFQAFVREAAKVALNSQGNVESLEAAHFP------------------GSQTTVKDRLQELIATIGENMTLRRVATL-AVSQGVIATYVHGQVSEGLGKIGVLVALE---SAGNVEFLSTLGRQIAMHVAATNPLALDAS 204          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_SINMW (Elongation factor Ts OS=Sinorhizobium medicae (strain WSM419) GN=tsf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.389e-27
Identity = 77/218 (35.32%), Postives = 118/218 (54.13%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE+T A M D K AL + + D+EAA+  LR +G   A KKS RTA EGL+ +A   +KA V+E+N ETDFV+RN+ FQ                   G     +G +          +P  G   +V++ I +  A +GEN+ LRR  +L     GVV+TY+H +   G+G++   ++L+    S   + L  +G ++AMH+ A NPL +  S
Sbjct:    7 MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASAGAKAVVVEINSETDFVARNDAFQELVR---------------GVANVALGTDGSVAAVSKATYPATG--KSVEDTIKDAIATIGENMTLRRSAMLEVED-GVVATYVHNAAGEGIGKLGVLVALK---SSGDKEALNAIGRQVAMHVAATNPLAVRSS 203          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_BARQU (Elongation factor Ts OS=Bartonella quintana GN=tsf PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.814e-27
Identity = 76/216 (35.19%), Postives = 115/216 (53.24%), Query Frame = 3
Query:  102 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLT 746
            +K+LRE + A M D K AL D + D+EAA+  LRK+G   A KK+ RTA EGL+ +   ++ A ++E+N ETDFV+RN++FQ             + NV    +  +P                  G E TV+  I +  + +GEN+  RR   LS    GVV+TY+H+    GLG++   +++E    + + +     G ++AMHI A NPL LT
Sbjct:    8 VKELRELSGAGMMDCKAALADTNGDMEAAVDWLRKKGIAKADKKAGRTAAEGLIGIVSKDTSAVLVEINSETDFVARNDLFQDIVRNVATAALDTQGNVESVSASFYP------------------GSEKTVEATIKDAISTIGENMTFRRSAKLSVKD-GVVATYIHSKVAEGLGKLGVLVAVET---TGNKEAAAVFGRQVAMHIAATNPLALT 201          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_BARBK (Elongation factor Ts OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tsf PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.814e-27
Identity = 79/216 (36.57%), Postives = 110/216 (50.93%), Query Frame = 3
Query:  102 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXE-NVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLT 746
            +K+LRE + A M D K AL++ + DIE A+  LRK+G   A KK+ RTA EGL+ +A     A V+E+N ETDFV+RN+ FQ             E +V    + ++P                  G E TV+ AI +    +GEN+  RR   LS  + G V+TY+H S   GLG++   + +E            R   K+AMHI A NPL LT
Sbjct:    8 VKELRELSGAGMMDCKAALMETNGDIETAVDWLRKKGMAKADKKAGRTAAEGLIGIASKGLSAVVVEVNSETDFVARNDAFQTIVRNVATAALDTEGSVESVSASIYP------------------GSEKTVEEAIKDAIGTIGENMAFRRSAKLSVQN-GAVATYIHNSVADGLGKLGVLVGIETTGDKEVAVDFAR---KVAMHIAATNPLALT 201          
The following BLAST results are available for this feature:
BLAST of EY661478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_MESSB3.307e-2937.10Elongation factor Ts OS=Mesorhizobium sp. (strain ... [more]
EFTS_MAGSA4.319e-2938.01Elongation factor Ts OS=Magnetospirillum magneticu... [more]
EFTS_METNO9.621e-2939.53Elongation factor Ts OS=Methylobacterium nodulans ... [more]
EFTS_GRABC2.799e-2838.21Elongation factor Ts OS=Granulibacter bethesdensis... [more]
EFTS_RHORT3.656e-2838.71Elongation factor Ts OS=Rhodospirillum rubrum (str... [more]
EFTS_RHIME8.145e-2835.32Elongation factor Ts OS=Rhizobium meliloti GN=tsf ... [more]
EFTS_METS48.145e-2837.90Elongation factor Ts OS=Methylobacterium sp. (stra... [more]
EFTS_SINMW1.389e-2735.32Elongation factor Ts OS=Sinorhizobium medicae (str... [more]
EFTS_BARQU1.814e-2735.19Elongation factor Ts OS=Bartonella quintana GN=tsf... [more]
EFTS_BARBK1.814e-2736.57Elongation factor Ts OS=Bartonella bacilliformis (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661478 ID=EY661478; Name=EY661478; organism=Citrus sinensis; type=EST; length=861bp
GACTTATTTTCCTTCAATACCTGAACCCAAAATCCTCTTTTGCTTTAATT
TCAAGAAACTTCTTTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATCT
CATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAGT
TGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATTG
AGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCAC
TGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATTG
AGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTAC
TTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCACA
GCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTGA
AGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAAT
GCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGAG
GGGTTTTTTACTATCTGCATCTTCACCTGGGGTTGTTTCTACCTACCTCC
ACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGGACTCTATCTCTT
GAAGTAGAGGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGGAT
CAAATTGGCAATGCATATAGTTGCTCAAAACCCATTATTCTTGACAAAGA
GCTTTGTTCTGCTGATGCATTAGAGAATGAACTGGAAATCCTTAATCTCA
GGCAGAAAGTACAGGGAAGTCCCCATTGCCAACAAAAAATGGGGAAAGGC
GTTTGCGAAAT
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