EY661165

Overview
NameEY661165
Unique NameEY661165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY661165_ssr119 microsatellite EY661165_ssr119:119..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7486 contig Csv1_Contig7486:21..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.675e-34
Identity = 75/118 (63.56%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   32 MGPKKDAKGGSKQPXXXXXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDDPV 385
            M PKKD K  +KQP                        VRDKLNNQVLFDK +Y+KL KEVP YKLITP+VVSERLKV GSLAR+AL ELR++GLIKQVV+HH QVIYTR TKGDDPV
Sbjct:    1 MPPKKDTKASAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 118          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.777e-33
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 2
Query:   32 MGPKKDAKGGSKQPXXXXXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            M PKKDAK  +KQP                        VRDKLNNQVLFDKA+Y+KL KEVP+YKLITPSVVSERLK+ GSLA++AL ELR++GLIKQVV+HH+QVIYTR TKGD+
Sbjct:    1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.457e-27
Identity = 69/116 (59.48%), Postives = 76/116 (65.52%), Query Frame = 2
Query:   32 MGPKKDAKGGSKQPXXXXXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            M PKKD KG SK+                         VRDKLNN VLFDKA+YDKL KEVPSYKLITPSVVSERLK+ GSLAR AL+EL  +G+IK V +H AQVIYTR TK  D
Sbjct:    1 MPPKKDTKGDSKK---GQKAKAGSGGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRATKDTD 113          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.611e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.611e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.611e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.611e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.611e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGD 117          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.747e-26
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL+EL  +GLIK V +H AQVIYTR TKG D
Sbjct:   39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNTKGTD 116          
BLAST of EY661165 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.044e-25
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 2
Query:  146 VRDKLNNQVLFDKASYDKLLKEVPSYKLITPSVVSERLKVHGSLARKALEELRKQGLIKQVVRHHAQVIYTRITKGDD 379
            VRDKLNN VLFDKA+YDKL KEVP+YKLITP+VVSERLK+ GSLAR AL EL  +G+IK V +H AQVIYTR TKG D
Sbjct:   39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNTKGTD 116          
The following BLAST results are available for this feature:
BLAST of EY661165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_SPOFR4.675e-3463.5640S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_DROME1.777e-3362.9340S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_BRABE1.457e-2759.4840S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP1.611e-2676.9240S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT1.611e-2676.9240S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE1.611e-2676.9240S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]
RS25_HUMAN1.611e-2676.9240S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN1.611e-2676.9240S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_DANRE2.747e-2676.9240S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU1.044e-2575.6440S ribosomal protein S25 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661165 ID=EY661165; Name=EY661165; organism=Citrus sinensis; type=EST; length=454bp
TTCGTCGACCCCGCGTCCGGTGATTTTTCCCATGGGTCCCAAAAAAGACG
CGAAGGGAGGTTCCAAACAGCCCTCCAAAACACCTAAAAAGAAGGAGGGA
GGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCAAAAGGAAAAGTTCG
TGACAAGTTAAACAATCAAGTTCTCTTCGACAAGGCCTCATATGACAAGC
TGTTAAAAGAAGTTCCATCATACAAATTAATCACTCCATCAGTTGTCAGT
GAACGATTGAAGGTCCATGGATCATTAGCACGTAAAGCTTTGGAAGAACT
CCGTAAACAAGGTCTAATAAAGCAAGTCGTCAGGCATCATGCTCAGGTTA
TCTACACTAGAATAACTAAAGGAGATGACCCCGTGTAATGAAAAACAAAT
TTGTAAAACTTTTTTAATACATATTTTTAAGTTAAAAAAAAAAAAAAAAA
AAAA
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