EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CITSI (50S ribosomal protein L33, chloroplastic OS=Citrus sinensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.050e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK
Sbjct:    1 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_BUXMI (50S ribosomal protein L33, chloroplastic OS=Buxus microphylla GN=rpl33 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.048e-31
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRVRVILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVRVILECTSCVRNGVNKESLGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_DRIGR (50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.469e-30
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILECTSCVRN +NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRIRVILECTSCVRNDLNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CERDE (50S ribosomal protein L33, chloroplastic OS=Ceratophyllum demersum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.272e-30
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRVRVILECTSC RNG NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHT HGEIK
Sbjct:    1 MAKGKDVRVRVILECTSCARNGGNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTTHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CARPA (50S ribosomal protein L33, chloroplastic OS=Carica papaya GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.290e-30
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+ RV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_EUCGG (50S ribosomal protein L33, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.243e-29
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV VILECT+CVR G+NKESRG+SRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTVILECTNCVRTGLNKESRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PLAOC (50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.121e-29
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRVRVILEC +CVRNGVNKES G+SRYITQKNRHNTPSRLELRKFCPYC+KHT+HGEIK
Sbjct:    1 MAKGKDVRVRVILECINCVRNGVNKESPGVSRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_GOSHI (50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.770e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_GOSBA (50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.770e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+VRV +ILECTSCVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PANGI (50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.618e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+ VILECTSCVRNGVNK S GISRYITQKNRHNTP+RLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRITVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_CITSI2.050e-32100.0050S ribosomal protein L33, chloroplastic OS=Citrus... [more]
RK33_BUXMI5.048e-3195.3850S ribosomal protein L33, chloroplastic OS=Buxus ... [more]
RK33_DRIGR1.469e-3092.3150S ribosomal protein L33, chloroplastic OS=Drimys... [more]
RK33_CERDE3.272e-3093.8550S ribosomal protein L33, chloroplastic OS=Cerato... [more]
RK33_CARPA7.290e-3090.7750S ribosomal protein L33, chloroplastic OS=Carica... [more]
RK33_EUCGG1.243e-2989.2350S ribosomal protein L33, chloroplastic OS=Eucaly... [more]
RK33_PLAOC2.121e-2989.2350S ribosomal protein L33, chloroplastic OS=Platan... [more]
RK33_GOSHI2.770e-2989.2350S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_GOSBA2.770e-2989.2350S ribosomal protein L33, chloroplastic OS=Gossyp... [more]
RK33_PANGI3.618e-2989.2350S ribosomal protein L33, chloroplastic OS=Panax ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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