EY661112

Overview
NameEY661112
Unique NameEY661112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7631 contig Csv1_Contig7631:1..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY661112 vs. ExPASy Swiss-Prot
Match: APD1_YEAST (Actin patches distal protein 1 OS=Saccharomyces cerevisiae GN=APD1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 3 
Query:  495 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL--------KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 770
            ++VF+CSH +RDKRCG+  P L + F++++   GL         + + +   +H+GGHK+A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct:  202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKFAANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298
The following BLAST results are available for this feature:
BLAST of EY661112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APD1_YEAST5.522e-1135.00Actin patches distal protein 1 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-029-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661112 ID=EY661112; Name=EY661112; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGGCAAAACCTCTTCTCATTCTCTCCCACGCACTCCACCCG
ACCCGGACGAGAACCCGAATCCTAATTACGCGCACCGACACCAATAACAT
GTCGACGATCTCAGCTGAAGACGACGCCAAGTATGGGTTCACACGAGAGG
AGATGTATAAGGAGAAGTTGGCCGGAACCGTCAATCCCTACGGCCGCCAC
GTGTTCCTCTGCTTTAAGGGACCCGAAATGTGGGTCGCACGTGTAGAAGC
CTCCGACACTGATACCCTCCCCAAGCTCCTTGCCTCTGCTCTCAAAACTC
GCAAAGACGACATGACCGTCAAGTCTTTAATGACAGTATGTGGAGGAGGA
GAAGGTACTGATGGAGATGTGTTGATTTTCCCTGAAATGATTAAATACAA
GGGTTTGAAGGAGTCGGATGTGGATAGCTTTGTCGATGATGTGCTTGTTA
ATGGAAAGCCATGGGCTTCGGGAGTCCAGGAAGGGTTGACTGGTTCATAT
GTCTTCGTATGCTCCCATGGTAGTCGAGATAAGAGATGTGGTGTTTGTGG
CCCAGCTCTTATTGAAAAATTCAATGCGGAGATTGATTCGCGAGGACTGA
AAGATCAGATCTTTGTTAAGCCATGCTCTCATATCGGGGGCCACAAATAT
GCTGGTAACTTGATCGTCTACAGTCCTGATTCAGAAGGGAAAATTATGGG
CCACTGGTATGGCTATGTCACTCCTGATGATGTGCCTGCAATACTGGATC
AGCATATTGCTAAGGGCGAAAATATTGAAAGACTTTGGAGNAGCCATTGG
GGCAATCTGCTGAAAGTGAGAAAGTGGATGAAAAGAAGCTTCCNATGGNN
AAAGAGATCAAAAGCNAGAGCTTGAGATGGCAC
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