EY661050

Overview
NameEY661050
Unique NameEY661050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3947 contig Csv1_Contig3947:42..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.074e-87
Identity = 171/203 (84.24%), Postives = 181/203 (89.16%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            ISCSV  NQVQAP AV+  DPKSK  DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QPIALKLLGSERSLQAL GVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQ  AEQGKALNAVASRNVKVI VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   47 ISCSVAPNQVQAP-AVQTQDPKSKP-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTR 247          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.995e-86
Identity = 168/203 (82.76%), Postives = 178/203 (87.68%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            ISCSV  NQVQ P A  QD PK K  DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QAL GVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA LLDINGQ  AEQGKALNAVASRN KVI VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   51 ISCSVAPNQVQVPAAQTQD-PKGKP-DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAALLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTR 251          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.155e-84
Identity = 161/203 (79.31%), Postives = 174/203 (85.71%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            I CSV  NQVQAPVAV  +    K  +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS  AL GVAMELEDSL+PLLR V IGI+PY++F+DAEWALLIGAKPRGPGMERA LLDINGQ  AEQGKALNAVASRNVKVI VGNPCNTNALICLK  P    K+FH LTR
Sbjct:   49 IRCSVAPNQVQAPVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHGLTR 250          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.788e-81
Identity = 155/205 (75.61%), Postives = 175/205 (85.37%), Query Frame = 1
Query:  259 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            +I CSV   +Q+QAP+      P  +  +C+GVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS  AL GVAMELEDSL+PLLR+V IGI+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQ  AEQGKALNAVAS NVKV+ VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTR 263          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.455e-80
Identity = 156/205 (76.10%), Postives = 173/205 (84.39%), Query Frame = 1
Query:  259 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            T+ CSV+   QVQ  VA  +     K  DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QAL GVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA LLDINGQ  A+QGKALNAVAS+NVKV+ VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTR 239          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.631e-79
Identity = 155/203 (76.35%), Postives = 169/203 (83.25%), Query Frame = 1
Query:  262 ISCSV--NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            I CS+  NQVQ PVAV       K  +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA+G V GPDQPIALKLLGSE+S  AL GVAMELEDSL+PLLREV IGI+PYE+FEDAEWALLIGAKPRGPGMERA LLDING+  AEQGKALNAVAS NVKVI VGNPCNTNALICLK  P    K+FH+LTR
Sbjct:   43 ICCSLAPNQVQTPVAVPTGAQSIKP-ECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLASGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWALLIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPPNIPAKNFHSLTR 244          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.760e-78
Identity = 152/206 (73.79%), Postives = 168/206 (81.55%), Query Frame = 1
Query:  259 TISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            T+ CSV     QVQ  VA       +  N+C+GVFC  YDLKAE++TKSWKK+V IAVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QAL GV MELEDSL+PLLREV IGI PYE+F+D +WALLIGAKPRGPGMERA LLDINGQ  A+QGKALNAVASRNVKV+ VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   37 TVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLREVSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVLVVGNPCNTNALICLKNTPNIPAKNFHALTR 242          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.334e-77
Identity = 148/207 (71.50%), Postives = 171/207 (82.61%), Query Frame = 1
Query:  259 TISCSVNQVQ-----APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            T+ CSV+  +        AV  + P S+  +C+GVFC TYDLKAE++TKSW+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QAL GVAMELEDSL+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDINGQ  A+QGKALNAVASRN +V+ VGNPCNTNALICLK  P    K+FHALTR
Sbjct:   37 TVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKAEDKTKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTR 242          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.456e-40
Identity = 91/158 (57.59%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MELED  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL ING     QGKALNAVASRNVKV+ VGNP NTNA I +K  P   RK+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLSINGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKAAPDLPRKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_VARPS (Malate dehydrogenase OS=Variovorax paradoxus (strain S110) GN=mdh PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.227e-40
Identity = 89/158 (56.33%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MEL+D  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL +NG     QGKALNAVASRNVKV+ VGNP NTNA I +K  P   RK+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELDDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLR 160          
The following BLAST results are available for this feature:
BLAST of EY661050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDHP_MEDSA2.074e-8784.24Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_PEA2.995e-8682.76Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MESCR8.155e-8479.31Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_FLABI3.788e-8175.61Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP1_SORBI2.455e-8076.10Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP_SPIOL4.631e-7976.35Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP2_SORBI1.760e-7873.79Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP_MAIZE4.334e-7771.50Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDH_METPP1.456e-4057.59Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH_VARPS7.227e-4056.33Malate dehydrogenase OS=Variovorax paradoxus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661050 ID=EY661050; Name=EY661050; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGAATCTTTCTCTCAAGACAAGACTTTTTAGTTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTNGAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCNGCTTATTAG
ATATCAATGGCCAGAATATTGCAGAGCAGGGAAAAGCTCTCAATGCTGTC
GCATCCCGTAATGTCAAGGTGATAGGTGTGGGGAACCCCTGTAACACCAA
TGCTTTAATTTGTTTGAAAATGCTCCCAGCATACCGGAAAGACTTTCATG
CTTTGACTAGATAGATGGA
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