EY661026

Overview
NameEY661026
Unique NameEY661026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 5.948e-96
Identity = 182/247 (73.68%), Postives = 199/247 (80.57%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SP-WXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEPPXT-LETXXA-TCWGYAT 832
            ++ATPFLGQ++  AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVL FQVVLMGLVEGFRINGLPGVGEG  LY    +  P               +EIKNGRLAMFSM  FF  AIVTGKGP E     L+   A   W YAT
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYAT 259          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.087e-89
Identity = 169/227 (74.45%), Postives = 183/227 (80.62%), Query Frame = 2
Query:  110 TPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEGTTLYLVAIF*SPWXC**SCYVC*N-SGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE 781
            TPFL GQ R  +A+ L+D+    N + TMGN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVL FQV+LMGLVEGFRINGL GVGEG  LY    +  P               +EIKNGRLAMFSM  FF  AIVTGKGP E
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 243          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.803e-68
Identity = 146/252 (57.94%), Postives = 163/252 (64.68%), Query Frame = 2
Query:  104 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEP--PXTLETXXATCWGYAT 832
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG   +Y    F                 +E+KNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYAT 257          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.803e-68
Identity = 146/252 (57.94%), Postives = 163/252 (64.68%), Query Frame = 2
Query:  104 RATPFLGQSRTTANALKDV------VPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEP--PXTLETXXATCWGYAT 832
            + T FLG +      ++ V      + M     +    +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG   +Y    F                 +E+KNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:    8 QTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP-LGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYAT 257          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.401e-67
Identity = 146/256 (57.03%), Postives = 167/256 (65.23%), Query Frame = 2
Query:  101 LRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            ++ + F+GQ+  ++    ++ V   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G P +GEG   +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:    6 IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYAT 259          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.401e-67
Identity = 139/214 (64.95%), Postives = 151/214 (70.56%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEP--PXTLETXXATCWGYAT 832
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G P +GEG   +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYAT 259          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.577e-67
Identity = 139/214 (64.95%), Postives = 151/214 (70.56%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            +WYG DR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMGL+EG+R+ G P +GEG   LY    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W +AT
Sbjct:   47 IWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP-LGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFAT 258          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 138/214 (64.49%), Postives = 150/214 (70.09%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXE--PPXTLETXXATCWGYAT 832
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG   +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W YAT
Sbjct:   20 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYAT 231          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.896e-67
Identity = 140/231 (60.61%), Postives = 156/231 (67.53%), Query Frame = 2
Query:  170 GNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEP--PXTLETXXATCWGYAT 832
            G A++TM          +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG   LY    F                 +E+KNGRLAMFSM  FF  AIVTGKGP +       +      W +AT
Sbjct:   31 GQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-LGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFAT 259          
BLAST of EY661026 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.688e-66
Identity = 143/256 (55.86%), Postives = 166/256 (64.84%), Query Frame = 2
Query:  101 LRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLXFQVVLMGLVEGFRINGLPGVGEG-TTLYLVAIF*SPWXC**SCYVC*NSGEEIKNGRLAMFSMLXFFXXAIVTGKGPXEP--PXTLETXXATCWGYAT 832
            ++ + F GQ+  ++    ++ +   G  + TM          +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG VEG+R+ G P +GEG   +Y    F                 +EIKNGRLAMFSM  FF  AIVTGKGP E       +      W +AT
Sbjct:    6 IQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFAT 259          
The following BLAST results are available for this feature:
BLAST of EY661026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_SOLLC5.948e-9673.68Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.087e-8974.45Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_ORYSJ1.803e-6857.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.803e-6857.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC3.401e-6757.03Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC3.401e-6764.95Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI7.577e-6764.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC9.896e-6764.49Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA9.896e-6760.61Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP1.688e-6655.86Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661026 ID=EY661026; Name=EY661026; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGNGATTC
CAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCTCCC
TGGTGTCGGAGAAGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTTGGNCTTGCTGATGATCCTGTTACGTTTGCTGAAACTCAGGTGAAGAA
ATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTTGGNNTTCTTTGNTCN
AGCTATTGTGACAGGCAAGGGTCCCTNAGAACCTCCTGNNACACTTGAGA
CCNTGTTNGCCACATGCTGGGGCTATGCTACCNAGTTGTACCTGGACAAA
ACCCATATGATACTGGTAATCTTGTCAGGGCAAGGAAATATGAAATTCGG
CTTGGAATCCAAAAAAAA
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