EY661025

Overview
NameEY661025
Unique NameEY661025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.687e-29
Identity = 75/217 (34.56%), Postives = 121/217 (55.76%), Query Frame = 1
Query:  160 GVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYA--EKAIKLKISGLL-IAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGM-XQDDPFIYVPNGIXTLLGIAQVMLY-SYYSTKSGEVSRXP 795
            GV GN+ +F LF +P  TF RI + KS E+FS +PY+ +++NC++ ++YG+P+V    ILV+T+N VG V +L YV +++ Y   +K  +  I G L + V LV   I+ T   +     ++ FVG +     I+M+ +P   I  V+KTKSVE+MP                Y +  + D ++   NGI T L ++Q+++Y  YY +   E +  P
Sbjct:   12 GVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEKTVKP 228          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.533e-14
Identity = 64/224 (28.57%), Postives = 105/224 (46.88%), Query Frame = 1
Query:  109 MSSVGISSIYSGCSVAAGVTGNIFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISY-AEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFV-GYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYYSTKS 774
            MS+V   S+ S  +V + V         F+S     R+ ++ KST   SG+P+IC  L+C   L YG+      I+L   VN +G+   L+Y  I+  +   K   +K  G ++ V +V   IV+T+  + D   R + V G +     +  FA+PL  +  VI+ K+ E +P                YG+   D FI +PN +  +L + Q+ L+  Y  +S
Sbjct:    1 MSAVAYDSLLSTTAVISTV-------FQFLSGAMICRKYIQKKSTGDSSGVPFICGFLSCSFWLRYGVLTNEQSIVL---VNIIGSTLFLVYTLIYYVFTVNKRACVKQFGFVLTVLVV--VIVYTN-RLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQIPNFLGCILSLLQLGLFVLYPPRS 211          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_DICDI (RAG1-activating protein 1 homolog OS=Dictyostelium discoideum GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.606e-14
Identity = 55/194 (28.35%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  190 LFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAE--KAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLF-VGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYY 762
            LF+ P+ T R I+  K+    +GL +I S+LNC   LW    L++    ++  VNS+G +F + YV  +       +A +  +  ++IA  L    I  +     D    R+  +G+LS    + MFASPL  + +VI++K+ E M                 +G+  +D +IY+PN + ++L   Q+ L   Y
Sbjct:   24 LFIMPLKTIRLIIEKKNVGTVAGLQFISSVLNCF--LWISYALLTSNTTML-FVNSIGMMFSIYYVFNYWKNINQVRASRDYLKKVMIACVLAITIISISYYNTVDDLDTRISRLGFLSSVVCVLMFASPLEKMAIVIQSKNSEGMIINVAILSLLCGLSWTIFGLLLNDIYIYLPNILASILSFVQLTLIKLY 214          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.934e-14
Identity = 51/194 (26.29%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  193 FVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYYSTKS 774
            F+S     R+ ++ KST   SG+P+IC  L+C   L YG+      I+L   VN +G+   LIY  I+  +             +   L+ + +V+T+      +      G       +  FA+PL  +  VI+ K+ E +P                YG+   D FI +PN +  LL + Q+ L+  Y  +S
Sbjct:   21 FLSGAMICRKYIQKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSIVL---VNIIGSTLFLIYTLIYYVFTVNKRAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQIPNFLGCLLSMLQLSLFVVYPPRS 211          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.434e-12
Identity = 53/196 (27.04%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  175 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYY 762
            +F   +F S +   R ++  +S E    LP++ + LN L   +YG  L   G +++  VN +GA  Q +Y++ +I Y+ +  +  +S +L+++ ++FLA  + ++   D N R   +G       ISM+ SPL  +  +IK+KS + +                 YG  Q D +I VPN    +  + +  L+S Y
Sbjct:   13 VFTLGMFSSGLSDLRVMVAKRSVENIQFLPFLTTDLNNLGWFYYGY-LKGDGTLII--VNLIGASLQTLYMAAYILYSLER-RYVVSQVLVSLGVLFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITVPNFPGIVTSLLRFWLFSRY 204          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 48/196 (24.49%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  175 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYAEKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYY 762
            +F   +F S +   R ++  +S E    LP++ + LN L   +YG  L   G +++  VN +GA  Q +Y+  ++ Y+ +  +   S +L+++ ++ L   + ++ + D N R   +G       ISM+ SPL  +  +I++KS + +                 YG+ Q D +I VPN    +  + +  L+S +
Sbjct:   13 VFTLGMFSSGLSDLRVMVAQRSVENIQYLPFLTTDLNNLGWFYYGY-LKGDGTLMI--VNVIGASLQSLYMGAYLLYSPER-RYVGSQVLVSLGVLLLGYCYFTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITVPNFPGIVTSLVRFWLFSQF 204          
BLAST of EY661025 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.615e-11
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 1
Query:  175 IFAFVLFVSPIPTFRRILRNKSTEQFSGLPYICSLLNCLITLWYGMPLVSPGIILVATVNSVGAVFQLIYVSIFISYA-EKAIKLKISGLLIAVFLVFLAIVFTSMEVFDSNGRRLFVGYLSVASLISMFASPLFIIKLVIKTKSVEFMPXXXXXXXXXXXXXXXAYGMXQDDPFIYVPNGIXTLLGIAQVMLYSYY 762
            +F   +F + +   R + R +S +    LP++ + +N L  L YG+ L   G +++  VNSVGAV Q +Y+  ++ Y+ +K   L  +  L+AV L  L   +  + V D   R   +G       ISM+ SPL  +  +++TKS + +                 YG    DP+I VPN    L  + ++ L+  Y
Sbjct:   17 LFTLGMFSTGLSDLRHMQRTRSVDNIQFLPFLTTDVNNLSWLSYGV-LKGDGTLII--VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLL--LGYGYFWLLVPDLEARLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKY 208          
The following BLAST results are available for this feature:
BLAST of EY661025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPG1_ARATH1.687e-2934.56Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_DROME1.533e-1428.57RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_DICDI7.606e-1428.35RAG1-activating protein 1 homolog OS=Dictyostelium... [more]
R1AP1_DROPS9.934e-1426.29RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_XENTR1.434e-1227.04RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_XENLA2.705e-1124.49RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_MOUSE4.615e-1127.92RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661025 ID=EY661025; Name=EY661025; organism=Citrus sinensis; type=EST; length=933bp
TTGCTCGACCCACGCGTCCGCAAATTAGTAAGGCAGAAGAGGGGCAGAGA
GAGTCGGCATTGGTGTTGAATTGAGTGATCAGTGAATTGCAAGTGAAGTT
TTAGGGAGATGTCTTCAGTTGGGATTTCTTCAATTTACTCAGGTTGTAGT
GTTGCAGCTGGCGTTACTGGGAACATATTTGCTTTTGTATTGTTTGTATC
GCCCATACCTACATTCAGGAGAATTTTGAGAAACAAGTCAACAGAACAAT
TCTCAGGATTGCCTTACATCTGTTCTCTCTTGAATTGCTTGATTACCCTT
TGGTATGGCATGCCTCTTGTATCCCCTGGTATTATATTAGTCGCTACAGT
GAATTCAGTTGGAGCAGTTTTCCAGTTGATTTATGTTAGCATCTTCATTT
CATATGCTGAAAAAGCTATAAAGCTGAAGATATCTGGATTATTGATAGCA
GTTTTTTTAGTATTTCTTGCCATAGTCTTCACGAGCATGGAAGTTTTTGA
CTCCAATGGGCGGCGGCTTTTTGTTGGATATTTGAGTGTTGCTTCTCTCA
TTTCTATGTTTGCTTCGCCATTATTCATTATTAAGTTAGTCATCAAGACG
AAGAGCGTTGAATTCATGCCCTTTTATCTTTCTCTTTCAAATTTTCTGAT
GAGTCTCTCCTTCCTAGCTTATGGAATGGNTCAGGATGACCCTTTCATTT
ATGTCCCAAATGGAATTNGAACACTTCTGGGGATTGCTCAAGTGATGTTG
TATTCCTACTATAGCACTAAATCCGGTGAAGTCTCAAGACNACCCCTGAT
CGATTCATTTGCATAAATTAATGGGAAATCATGGGTAGCAGAGAAGTAGC
GATCACATCTGNTAATCAGTAATCAGTGACTGATTATCTAAGCTCGATTC
CTTTGGATCTAGCGCTTCCTACTTGAGTCTGAG
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