EY660994

Overview
NameEY660994
Unique NameEY660994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7614 contig Csv1_Contig7614:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660994 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 2 
Query:  512 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDXDFDEYFHQPEKKRRLTVDQVQFLEKSFEVETSLNPKGKF-TGKRLGLQPRRLR-FGPKTRARWKTNSSKR 811
            RSM++ E+      S  RPFF     D   D  +D+    PEKKRRLT +QV  LEKSFE E  L P+ K    K+LGLQPR++  +    RARWKT   +R
Sbjct:   34 RSMMNMEET-----SKRRPFFSS-PEDLYDDDFYDDQL--PEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127
The following BLAST results are available for this feature:
BLAST of EY660994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HAT5_ARATH4.109e-1145.10Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660994 ID=EY660994; Name=EY660994; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGGGGGAAAAAATAGGGGAATAAACTATCTTCATATCCACT
TCCACTTCCACTTCCACTTCCTCTTCTTCTTGTCCACTTTGCTTCTCCAA
ACTTCAAACTTCACACTTCTCCTGAAACCTCTCACGAAACACTCTTTCAA
ATCCCTCTATTCTGAGTGATGGGTATGAGCAGCCGCTGCTCCCACACATC
TCACATAACCGAGATCATAATCACCAGCTTCTTTCGTCATAAGTCTTAAA
TTAAATTTCTTCTCGACTGTTGAATCATCGCATCATCTTTAGCGATGGCT
GCTTAAAAGATTAAGAATATTAGTTTTAAGTTAAATGGCGGGTGGGAGGA
TGTATAATCAAAATAGTTCTAGTGGTGGTGGTAGTGGTGGTGGTACTTCA
AGTCTGTCCTTTCTGATTCAAAGCCAAAAGGGTTCTTGCTCTAACTCTCA
GAATCTCGATGCTTCGTTCCTCTCTGGCCCTTCTCCTTCTCCTTCTCCTT
TTCTTGGATCAAGATCCATGGTGAGCTTTGAAGATGTGCACTTAGCAAAT
GGATCCAATAACAGGCCATTTTTCCGCCCATTTGATCGTGATGAAAATGG
GGATGANGACTTTGATGAGTACTTTCATCAACCTGAAAAGAAAAGACGGC
TTACGGTTGATCAAGTCCAGTTTCTTGAAAAAAGCTTCGAGGTAGAGACA
AGCTTGAACCCGAAAGGAAAATTCACTGGCAAAAGACTTGGCTTGCAGCC
TAGAAGGTTGCGATTTGGTCCCAAAACGCGGGCTCGGTGGAAGACTAACA
GCTCGAAAAGGATACGATGATTGCAAACAGCTATATAGCCTAAGGCGATA
TGACATCTCTCCAGA
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