EY660962

Overview
NameEY660962
Unique NameEY660962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660962_ssr131 microsatellite EY660962_ssr131:131..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13232 contig Csv1_Contig13232:5..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660962 vs. ExPASy Swiss-Prot
Match: DNAJ8_ARATH (Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.146e-33
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:  304 RVKVICXXXXXXXXXXVMDPYKTLRIQRGASESEVKKAFRQLALQYHPDVCRGNNCGVQFHLINEAYDMVMNNFREEPNEPEIMYQPYDGGIDEPFRGMNDPDWDLWEEWXG 639
            R KV+C          VMDPYKTL+I+  +SE EVKKAFRQLA +YHPDVCRG+NCGVQF  INEAYD+V+   + +    E  ++P+D   DE   GMNDPD D WEEW G
Sbjct:   42 RSKVVCSSSSS-----VMDPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQMEGTE-EFEPFD-VYDEGLNGMNDPDCDTWEEWMG 146

HSP 2 Score: 40.817 bits (94), Expect = 1.146e-33
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2 
Query:  635 MGWEGAGIXDYSSHVNPY 688
            MGWEGAG  DYSSHVNPY
Sbjct:  145 MGWEGAGTRDYSSHVNPY 162
The following BLAST results are available for this feature:
BLAST of EY660962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNAJ8_ARATH1.146e-3356.25Chaperone protein dnaJ 8, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-027-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660962 ID=EY660962; Name=EY660962; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGATTATTTATTATCAGCCAATCTAAATTCATCGTCATTGA
ATCTCATCTATCCAAAAAAGAAAAAATAAAAGAAGAAGAAAATCAAATTT
TGCTTGTGGGATCTTTTGCTTTCAACGTATAAAGAAAGAAAGAAAGAAAG
AAAGATTAAAGCTTGTTGCTCGCGGCTTTGTGAGTTTTTGATTTGAGAAA
AATGGCAAGTGTTGCAGGGACGATCGGAGCAAATGGGTCGTCGGGTTCAT
CATCTTCATGGACTCAGCTGAAGAATATGAAGAAGAAAAAAATGATGATG
GGCAGAGTCAAGGTCATTTGCTCTGCTTCTTATTCATCTTCATCGTCTTC
TGTTATGGATCCTTACAAGACTCTCAGGATTCAGCGTGGTGCCTCTGAAT
CTGAGGTCAAGAAAGCCTTTAGGCAGCTTGCTTTGCAGTATCATCCGGAT
GTATGCAGAGGAAACAATTGTGGAGTTCAGTTTCATCTGATTAATGAAGC
CTATGATATGGTGATGAATAATTTCAGGGAGGAACCCAATGAACCGGAGA
TTATGTACCAGCCGTACGATGGAGGAATTGATGAGCCGTTTAGGGGAATG
AACGACCCAGATTGGGATTTATGGGAGGAGTGGNATGGGGTGGGAAGGTG
CTGGAATTANGGATTACTCATCGCACGTTAATCCTTACATCTAAAACTTT
GTAATTAATTAAAAAAAAAAACTCAAAAAGTAATAATGAGAGAATGGTCG
TGTACCCACGTCTTTGTTGGTGTACATAAAAGATGTGGAGGAGTGAGGGA
AAATAAAAAAAAAAAAAAAGCCATATTTGGTGTCATATGTAGTAAGCTTA
GGTATGGCTTTTGATACTTATTCAACACTAGTGATTGAATTGTCCCAAAA
AATTTA
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