EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2C_ARATH (Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.508e-91
Identity = 167/202 (82.67%), Postives = 188/202 (93.07%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + QLN+I+KVDVQGSIEAVRQALQVLPQ+NVTLKFLLQATGD+S SDVDLA AS+AI+ GFNVKA GSVK  A+NKGVEIRLYRVIY+LIDD+RNAMEGLLE+VEEQ+PIGSAEVRA FSSGSGRVAGCMV+EGK VK CGIRV+R GKTVHVGVLDSL+RVKENVKEV+AGLECG+G  DYDDW EGDIIEAFN++Q++RT
Sbjct:  798 LHQLNIILKVDVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIYELIDDVRNAMEGLLESVEEQIPIGSAEVRATFSSGSGRVAGCMVNEGKFVKDCGIRVVRKGKTVHVGVLDSLKRVKENVKEVSAGLECGIGMDDYDDWIEGDIIEAFNAVQKRRT 999          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2C_PHAVU (Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris GN=IF2CP PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 3.046e-84
Identity = 154/200 (77.00%), Postives = 179/200 (89.50%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRK 606
            + QLN+I+KVD+QGSIEAVR+ALQVLPQ+NVTLKFLL+ATGD++ SDVDLAVASKAII+GFN   PGSVK+YADNK VEIRLYRVIY+LIDD+R AMEGLLE VEEQ+ IGSA VRA+FSSGSGRVAGCMV+EGK++K CGIRV R GK VHVG++DSLRRVKE VKEVNAGLECG+G  D+DDWEEGDIIE    ++R+
Sbjct:  797 LHQLNIILKVDLQGSIEAVRKALQVLPQENVTLKFLLEATGDVNTSDVDLAVASKAIIMGFNAXTPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQLTIGSAVVRAVFSSGSGRVAGCMVTEGKVLKDCGIRVKRKGKIVHVGIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDIIEPSTQLRRR 996          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CYAP7 (Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC 7424) GN=infB PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.021e-55
Identity = 100/203 (49.26%), Postives = 149/203 (73.40%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+I+K DVQGS+EA+  +L+ LPQ+ V ++ LL A G+I+ +DVDLA AS A+I+GFN       +  AD +G++IR Y +IY L+DD++ AMEGLL+  E + P+G AEVRA+F  G G VAGC V  GK+++   +RV R G+ ++ GVLDSL+R+KE+ +EVNAG ECG+G + ++DW+EGD IE F  + ++RT
Sbjct:  895 KLKELNLILKADVQGSVEAILGSLKQLPQNEVQIRVLLAAPGEITETDVDLAAASGAVIVGFNTTLASGARQSADQEGIDIREYNIIYKLLDDIQGAMEGLLDPEEVESPLGVAEVRAVFPVGRGAVAGCYVQSGKIIRNRQLRVRRKGEVIYEGVLDSLKRMKEDAREVNAGYECGIGVSKFNDWQEGDSIEVFEMVMKRRT 1097          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_NOSP7 (Translation initiation factor IF-2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.971e-55
Identity = 101/202 (50.00%), Postives = 146/202 (72.28%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  AL+ +PQ+ V ++ LL   G+I+ +D+DLA AS A+I+GFN       +  AD  GV++R Y VIY L++D+++A+EGLLE    + P+G  EVRA+F  G G VAGC V  GKLV+ C +RV R GK ++ GVLDSL+R+KE+ +EVNAG ECGVG   ++DW EGDIIE++  + ++RT
Sbjct:  850 LKELNLILKGDVQGSVEAIVGALKQIPQNEVQIRMLLATAGEITETDIDLAAASNAVIIGFNTTFASGARQAADEAGVDVREYNVIYKLLEDIQDALEGLLEPELVEEPLGQTEVRAVFPVGRGAVAGCYVQSGKLVRNCKVRVRRGGKVIYEGVLDSLKRMKEDAREVNAGYECGVGMDKFNDWVEGDIIESYQMVTKRRT 1051          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ANAVT (Translation initiation factor IF-2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.474e-54
Identity = 99/202 (49.01%), Postives = 145/202 (71.78%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ +PQ+ V ++ LL A G+I+ +D+DLA AS A+I+GFN       +  AD  GV++R Y +IY LI+D++ A+EGLLE    + P+G  EVRA+F  G G VAGC V  GKLV+ C +RV R GK ++ GVLDSL+R+K++ +EVNAG ECG+G   + DW EGDIIE++  + ++RT
Sbjct:  832 LKELNLILKGDVQGSVEAIVGSLKQIPQNEVQIRMLLTAAGEITETDIDLAAASGAVIIGFNTTFASGARQAADEAGVDVREYNIIYKLIEDIQGALEGLLEPELVEEPLGQTEVRAVFPVGRGAVAGCYVQSGKLVRNCKVRVRRAGKVIYEGVLDSLKRMKDDAREVNAGYECGIGVDKFHDWAEGDIIESYQMVTKRRT 1033          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ANASP (Translation initiation factor IF-2 OS=Anabaena sp. (strain PCC 7120) GN=infB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.474e-54
Identity = 99/202 (49.01%), Postives = 145/202 (71.78%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ +PQ+ V ++ LL A G+I+ +D+DLA AS A+I+GFN       +  AD  GV++R Y +IY LI+D++ A+EGLLE    + P+G  EVRA+F  G G VAGC V  GKLV+ C +RV R GK ++ GVLDSL+R+K++ +EVNAG ECG+G   + DW EGDIIE++  + ++RT
Sbjct:  833 LKELNLILKGDVQGSVEAIVGSLKQIPQNEVQIRMLLTAAGEITETDIDLAAASGAVIIGFNTTFASGARQAADEAGVDVREYNIIYKLIEDIQGALEGLLEPELVEEPLGQTEVRAVFPVGRGAVAGCYVQSGKLVRNCKVRVRRAGKVIYEGVLDSLKRMKDDAREVNAGYECGIGVDKFHDWAEGDIIESYQMVTKRRT 1034          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CYAP4 (Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=infB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.926e-54
Identity = 100/202 (49.50%), Postives = 140/202 (69.31%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  AL  +PQ+ V L+ L  A G+++ +DVDLA AS A+++GFN       +  AD  GV+IR Y +IY L+DD+  AMEGLLE    + P+G A+VRA+F  G G VAGC V  GKL++ C IRV+R G  VH G L+SL+R+KE+ +EVNAG ECG+   D+  W EGD IEA+  + ++RT
Sbjct:  799 LKELNLILKADVQGSVEAILNALGQIPQNEVQLRVLYAAPGEVTETDVDLAAASNAVVIGFNTTLASGSRASADQTGVDIREYNIIYKLLDDIEGAMEGLLEPELVEEPLGQAQVRAVFPVGKGFVAGCYVQSGKLIRNCKIRVLRSGNLVHSGTLNSLKRIKEDAREVNAGYECGIRLDDFQGWAEGDQIEAYQMVTKRRT 1000          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_TRIEI (Translation initiation factor IF-2 OS=Trichodesmium erythraeum (strain IMS101) GN=infB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.285e-54
Identity = 101/201 (50.25%), Postives = 146/201 (72.64%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGSIEA+  AL+ LPQ  V L+ LL   G+++ +D+DLA AS+A+I+GFN       +  AD  GV++R Y VIY L+DD++ AMEGLL+    + P+G  EVRA+F+   G VAGC V  GK+V+ C +RV R+G+ V+ G+LDSLRR+K++VKEVNAG ECGV   ++++W EGDIIEA+  + ++R
Sbjct:  855 LKELNLILKGDVQGSIEAIVAALRQLPQKEVQLRLLLSGAGEVTETDIDLAAASEAVIIGFNTTMASGARQAADAAGVDVREYNVIYKLLDDIQGAMEGLLDPELIEEPLGQVEVRAVFTINRGAVAGCYVLSGKVVRNCKVRVRRNGEIVYQGILDSLRRMKDDVKEVNAGYECGVSFDNFNNWSEGDIIEAYQMVTKRR 1055          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNP6 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=infB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.317e-54
Identity = 101/202 (50.00%), Postives = 141/202 (69.80%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LPQ  V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y +IY L++D++ AMEGLLE    + P+G  EVRA+FS G G VAGC V  GK ++ C IRV R    V+ G LDSL+R+KE+VKEVN+G ECG+G   +  W+EGDIIE +  + ++RT
Sbjct:  826 LKELNLILKADVQGSVEAILGSLEQLPQKQVQVRVLLAAPGEITETDVDLAAASGAVIVGFNTTLASGAKRAADEAGVDVRDYDIIYKLLEDIQAAMEGLLEPELVEEPLGQVEVRAVFSIGRGAVAGCYVQSGKAIRNCNIRVRRGSNLVYTGTLDSLKRMKEDVKEVNSGYECGIGLDSFSAWQEGDIIETYRMVTKRRT 1027          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNE7 (Translation initiation factor IF-2 OS=Synechococcus elongatus (strain PCC 7942) GN=infB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.317e-54
Identity = 101/202 (50.00%), Postives = 141/202 (69.80%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LPQ  V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y +IY L++D++ AMEGLLE    + P+G  EVRA+FS G G VAGC V  GK ++ C IRV R    V+ G LDSL+R+KE+VKEVN+G ECG+G   +  W+EGDIIE +  + ++RT
Sbjct:  826 LKELNLILKADVQGSVEAILGSLEQLPQKQVQVRVLLAAPGEITETDVDLAAASGAVIVGFNTTLASGAKRAADEAGVDVRDYDIIYKLLEDIQAAMEGLLEPELVEEPLGQVEVRAVFSIGRGAVAGCYVQSGKAIRNCNIRVRRGSNLVYTGTLDSLKRMKEDVKEVNSGYECGIGLDSFSAWQEGDIIETYRMVTKRRT 1027          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2C_ARATH1.508e-9182.67Translation initiation factor IF-2, chloroplastic ... [more]
IF2C_PHAVU3.046e-8477.00Translation initiation factor IF-2, chloroplastic ... [more]
IF2_CYAP71.021e-5549.26Translation initiation factor IF-2 OS=Cyanothece s... [more]
IF2_NOSP72.971e-5550.00Translation initiation factor IF-2 OS=Nostoc punct... [more]
IF2_ANAVT1.474e-5449.01Translation initiation factor IF-2 OS=Anabaena var... [more]
IF2_ANASP1.474e-5449.01Translation initiation factor IF-2 OS=Anabaena sp.... [more]
IF2_CYAP41.926e-5449.50Translation initiation factor IF-2 OS=Cyanothece s... [more]
IF2_TRIEI3.285e-5450.25Translation initiation factor IF-2 OS=Trichodesmiu... [more]
IF2_SYNP67.317e-5450.00Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNE77.317e-5450.00Translation initiation factor IF-2 OS=Synechococcu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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