EY660398

Overview
NameEY660398
Unique NameEY660398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660398_ssr475 microsatellite EY660398_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12082 contig Csv1_Contig12082:42..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660398 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.662e-47
Identity = 119/274 (43.43%), Postives = 146/274 (53.28%), Query Frame = 1
Query:   55 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRRGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRAPSSSKAFTGTARLLSGETV----XXXXXXXXXNVSHNITFWRNGVTVDDGPLXRMDDPANAFLLESIMRVECPRSFD 837
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE V              + H ITFW NG TV+DGPL    DP NA  + SI R ECP   +
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELE 275          
BLAST of EY660398 vs. ExPASy Swiss-Prot
Match: NSF1C_DICDI (NSFL1 cofactor p47 homolog OS=Dictyostelium discoideum GN=nsfl1c PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 55/170 (32.35%), Postives = 76/170 (44.71%), Query Frame = 1
Query:  376 KKEDKKAATGTSRGGIRTLADLNRTPPGGAXXXXXXXEP----QQYYTGGEKSGMLVQDPTK-------GNQVDEIFNQAR--------QSAVERPDLRAPSSSKAFTGTARLLSGETVXXXXXXXXXNVSHNITFWRNGVTVDDGPLXRMDDPANAFLLESIMRVECPR 828
            K   KKA  G   GGIRTL+D N              +     QQY+TGGEKSG++V+   K       G+ V+++F+ A+        +  VE+PD    S       T +     +           V   +TFW  G T+DDGPL + D+P N  LL+ I R   PR
Sbjct:   86 KTVSKKAPAGGRVGGIRTLSDFNNDDHDDHDHSDGDDDEDDRSQQYFTGGEKSGLVVESAPKKGKNGGSGDIVNDVFDSAKRHGAVASNEKKVEKPD-SFDSVGYQLGATDQGNRNVSKPKEKDPNSQVVEVKVTFWNQGFTIDDGPLRKYDNPENKELLDDIQRGIVPR 254          
The following BLAST results are available for this feature:
BLAST of EY660398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBAX1_ARATH1.662e-4743.43UBA and UBX domain-containing protein At4g15410 OS... [more]
NSF1C_DICDI7.793e-1332.35NSFL1 cofactor p47 homolog OS=Dictyostelium discoi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660398 ID=EY660398; Name=EY660398; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGGAAAAATCGAAAACGAATCGGATCAATGGAGAACCCAAC
AGCAGAAGCTAACTCTTCTTTAATCAATTCTTTCGTGGAGATCACATCAT
CCACCAAAGACGAAGCTCTCTTCTTCTTGGAGTCTCATCAGTGGAATCTA
GACGCCGCCGTTTCGACTTTTCTAGACAACGCCGCAGCGGCCACCGCCTC
CCCCGAAGCATCTCAATCGGTCGCTACTCTCCCTGCCGTTAACTCCCCGT
CGCTTTCAAACTCCCCCTCGACCTCTCCGTCTGCGTCTTTGTCTCGTTCC
CCGTCCCGGTCTCGGTCGCCATCACCTGCTGCGGCTCGCGATCCGTACGA
GCTGCGTTCCCGAAGCCGACGGGGGAAGAAGGAGGATAAGAAGGCGGCGA
CTGGGACATCACGTGGGGGCATTCGGACTCTTGCTGATCTGAATAGGACT
CCTCCTGGTGGGGCCGATAGCGATGACGACGACGACGAGCCGCAGCAGTA
TTATACTGGTGGTGAGAAGAGCGGGATGCTGGTCCAAGATCCTACCAAAG
GAAATCAAGTGGATGAAATTTTCAATCAAGCTAGACAATCAGCTGTAGAA
AGGCCTGACCTTCGAGCACCATCAAGCTCAAAAGCCTTCACTGGGACAGC
AAGGTTACTCTCTGGAGAGACAGTATCATCTGCTCCAGCTCCTCCGNNCT
GAAATGTCTCACACAACATCACTTTTTGGAGGAATGGGGTCACTGTAGAT
GATGGTCCATTGNCGAGGATGGATGATCCTGCAAATGCTTTCCTTTTGGA
GAGCATCATGAGGGTCGAGTGCCCAAGGAGCTTTGACAGCTGATAAGAAA
CTCGTGTGCTGTTGAACTCATCATAGCGAGAGGAGA
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