EY660357

Overview
NameEY660357
Unique NameEY660357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig728 contig Csv1_Contig728:16..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660357 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.574e-19
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  222 CLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLAXILHCDEFRDLFPK----NTQVKCLSDAGMVLD 716
            C DG+  GY++    GS    WL+ LEGG +C    NC  R +T R   S+K        TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+ KG+  A   LL+G SAGG   +L+ D   +L  +    + QV+ L+D+G  LD
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLD 277          
BLAST of EY660357 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.969e-18
Identity = 61/172 (35.47%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  222 CLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLAXILHCDEFRDLFPK----NTQVKCLSDAGMVLD 716
            C DG+  GY++    GS    WL+ LEGG +C    NC  R  T R   S++   +    TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+ +G+  A   LL+G SAGG   +L+ D   +   K      QV+ L+D+G  LD
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLD 270          
The following BLAST results are available for this feature:
BLAST of EY660357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE1.574e-1936.63Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN2.969e-1835.47Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660357 ID=EY660357; Name=EY660357; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGGTCTCGCCTAAAGAAAGCTAAAAGAAAATGAAGCCGATG
TTGTATTTCTGCTTCGTGATTGTTTTGATCCGCTCTGCGAGTGGCTTCTT
CGAGGATTTGGATGCTCGAGAGACTTCGCTTTCTTACTTAGAAAACGATG
CTGCTGCTACGTCCGAGCCTCTCATGGTCCCTCTCACGCTTATTCAGGGA
GCTGATTCCAAAGGAGCTGTCTGTTTGGATGGCACGCTGCCTGGTTATCA
TATACACCGGGGTTCTGGATCGGGAGCAAACAGCTGGCTCATTCATTTGG
AAGGAGGTGGATGGTGTAATACCATTAGAAATTGTGTGTACCGCAAAACC
ACCCGCCGTGGATCAGCAAAATTTATGGAAAAGCAGCTACCATTTACCGG
CATATTGAGCAACAAAGCTGAAGAAAATCCAGATTTCTTCAACTGGAACA
GAGTAAAGCTGCGTTACTGTGACGGGGCTTCGTTTAGTGGAGATAGTCAA
AATGAGGGAGCACAACTTTATTTTCGAGGACAACGTATTTGGTTAACTGC
TATGCAAGATTTAATGGCCAAGGGAATGCAGAATGCTGACCAGGCTCTTC
TTTCTGGATGCTCTGCGGGAGGGCTGGCANTCATTCTTCATTGTGATGAG
TTCCGCGATTTATTTCCTAAAAACACCCAAGTGAAATGTCTAAGTGATGC
TGGAATGGTTCTAGATGCTGNTGATGTATCTGGGGGGCACACCTTAAGGA
TATGTTTGCAGGCGTANNTAGCTTACAGGAAAGTCAAANGAATCTGCCCA
TTACTTGTACCAGCCNACTGGATNNCACATCGTGCTTCTTCCCTCAAAAT
TGGNTGCAATATCAGGACTCTATGGTTTCTCTTCATGCACATATGATGCA
TGGCAGGGTCAGCTAGNCTAGCTCCACGACGGC
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