EY660351

Overview
NameEY660351
Unique NameEY660351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660351_ssr389 microsatellite EY660351_ssr389:389..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13499 contig Csv1_Contig13499:4..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.291e-32
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGP  +DMFHWQATIMGP++SP++GGVFLV+IHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHP 76          

HSP 2 Score: 57.3806 bits (137), Expect = 3.291e-32
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPALTYPRXLCHXL-LLTDP 887
            FHP INSNG+ICLDILK+QWSPALT  + L     LLTDP
Sbjct:   74 FHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDP 113          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.630e-26
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  619 AGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+ D+FHWQATIMGP DSP++GGVF VSI F  DYPFKPPKV F+T V+ P
Sbjct:   23 AGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHP 77          

HSP 2 Score: 51.2174 bits (121), Expect = 6.630e-26
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 3
Query:  771 FHPYINSNGSICLDILKEQWSPALTYPRXLCHXL-LLTDP 887
            +HP I+S GSICLDILKEQWSPA T  + L     LLTDP
Sbjct:   75 YHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDP 114          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.198e-23
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGP+DSP+AGGVFLVSIHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGPSDSP++GGVFLV+IHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGPSDSP++GGVFLV+IHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGPS+SP+AGGVFLV+IHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.174e-22
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGP++SP++GGVFLV+IHFPPDYPFKPPKV FRT VF P
Sbjct:   23 AGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.414e-22
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPVA+DMFHWQATIMGP +SP+AGGVFLVSIHFPPDYPFKPPKV F+T V+ P
Sbjct:   23 AGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.206e-21
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGP  DDMF WQATIMGP+DSPFAGGVFLV+IHFPPDYPFKPPKV FRT V+ P
Sbjct:   23 AGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHP 76          
BLAST of EY660351 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.880e-20
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1
Query:  619 AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVXFRTXVFTP 780
            AGPV DD+FHWQATIMGP+DSP+AGGVF +SIHFP DYPFKPPKV F T ++ P
Sbjct:   23 AGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHP 76          
The following BLAST results are available for this feature:
BLAST of EY660351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
UBC29_ARATH3.291e-3279.63Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH6.630e-2672.73Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SOLLC2.198e-2388.89Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_ARATH4.897e-2387.04SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH4.897e-2387.04Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH6.395e-2387.04Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH3.174e-2283.33Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH5.414e-2283.33Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH1.206e-2183.33Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC4_SCHPO3.880e-2075.93Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660351 ID=EY660351; Name=EY660351; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAG
AAATTCCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTAC
AGAAGGACCCTCCTGCTTCTTGTAGCGCTGGTTCTTTCTTTATCTCCTTC
TCAATCTTATTTGTGTTTCTATTTTCATTTGTCATTGAAGACTATATACT
CATAGAGTTGACTTATCTACCCACTAATCACTCCCACGATGGAGAGGCTT
AAAGTTTTTAAGATACCAGGTGAAACGGAACTTTATTTCTTGGTTCCAAT
TCCACTTCTCTTCTCGCAGCACTGGTTCTTTCTTCATTTCCATCTCAGCA
TGTTTTCTTATTTTTTTCTATTTTATTTGTCATTGAAGATATATATATAT
ATATATATGTATTCATGAAGTTAACTTGACTTATCAACCCACTAATCTCT
CACATGATGGGAGGAATAAAACTTTGAAGATATTAGGTGAAATGGAATTT
TATTTCTTGGTTCCAAATCCACTTGCTTTTCTAATTATCTAAACTTTTTT
GCCTTTAAGTCCATCACAGCTTTGAGTTAATCTTTTGGAACTTTGTAATT
TTGAGTGCTGCCTATTTTGCAGGCCCTGTTGCTGATGACATGTTCCATTG
GCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTAT
TTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAAG
GTGGNCTTCCGTACTAANGTTTTCACCCCTACATCAACAGCAATGGTAGC
ATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACATATCC
NAGGNNACTCTGTCATTNGCTACTACTTACTGATCCGA
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