EY660345

Overview
NameEY660345
Unique NameEY660345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:989..1705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 6.549e-65
Identity = 100/132 (75.76%), Postives = 108/132 (81.82%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  306 APTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 67.781 bits (164), Expect = 6.549e-65
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  451 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 561
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.323e-62
Identity = 93/132 (70.45%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG
Sbjct:  297 APTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 66.2402 bits (160), Expect = 1.323e-62
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  454 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 564
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.105e-61
Identity = 93/132 (70.45%), Postives = 102/132 (77.27%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG
Sbjct:  306 APTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 1.105e-61
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  454 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 561
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.194e-61
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG
Sbjct:  296 APTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 65.0846 bits (157), Expect = 3.194e-61
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  454 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 564
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.094e-58
Identity = 88/132 (66.67%), Postives = 100/132 (75.76%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  304 APTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 1.094e-58
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  454 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 567
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.199e-52
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  306 APTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.500e-50
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 416
            APT  DRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  293 APTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 94/131 (71.76%), Postives = 108/131 (82.44%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 413
            APT  DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  308 APTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.116e-49
Identity = 95/130 (73.08%), Postives = 107/130 (82.31%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 410
            APT  DRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  306 APTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY660345 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.050e-48
Identity = 94/131 (71.76%), Postives = 106/131 (80.92%), Query Frame = 3
Query:   21 APTMADRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 413
            APT  DRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  310 APTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of EY660345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR6.549e-6575.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.323e-6270.45Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.105e-6170.45Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.194e-6168.94Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.094e-5866.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.199e-5277.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.500e-5072.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.116e-4971.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.116e-4973.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.050e-4871.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660345 ID=EY660345; Name=EY660345; organism=Citrus sinensis; type=EST; length=716bp
TTCTCGACCCACGCGTCCGGGCACCTACAATGGCGGACCGTATTGGTGTG
TGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAA
GCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGA
GGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGT
GTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAAC
ATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACA
TGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAG
TATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAG
TGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATG
GGAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTAC
TGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAA
GCTGCCAATACACGCTTTAGGNCTTGNTTCTAGGGTTGAGAAGTGTCGCA
CTTTGCTTAGGATGTGAGATATTCAAATAATATTGTTGCATTTTCATTTT
CTTGGTAATTAAAAAGATCCCTCTATTTTTGGGTATTTCCCCNAAAAAAA
AAAAAAANNNAAAAAA
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