EY660343

Overview
NameEY660343
Unique NameEY660343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660343_ssr122 microsatellite EY660343_ssr122:122..137. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660343_ssr13 microsatellite EY660343_ssr13:13..28. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660343_ssr33 microsatellite EY660343_ssr33:33..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY660343 vs. ExPASy Swiss-Prot
Match: ERFL1_ARATH (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.834e-31
Identity = 75/179 (41.90%), Postives = 97/179 (54.19%), Query Frame = 1 
Query:  301 MVSLRRRKLLGLCSGKSSFVAPLPRTSENGNAPENSTQNIRPISLRPSSLDNVSLQRGIAVEKEGPASSNVSGASSPEQRSKKPKEQHVENEQHFPSFSGL----------PIXXXXXXXXXQIQNQEPCLMRGVYFKNMKWQAAIKVDKKTIHLGTVGSQEEAARLYDRALSCVGREP 807
            MVSLRRR+LLGLC G + +V PLP  +           N R  +  P   + V+    + VEK+           + E+RS++ + +H+     +   S +          P          ++ NQEPCLMRGVY+KNMKWQAAIKV+KK IHLGT  SQEEAARLYDRA    GREP
Sbjct:    1 MVSLRRRRLLGLCCGPNGYVTPLPFLTAEEMITGIPNPNARA-AYNPGPAETVTT---VIVEKK-----------AIEERSRRTRSKHMHFRSDYSDISPVNSDSISPKYQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREP 164

HSP 2 Score: 32.3426 bits (72), Expect = 4.834e-31
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 3 
Query:  783 AFMCGKGAHFELSEERKQNXAXQ-WDEFL 866
            AFMCG+  +FELSEE  +    Q W+EFL
Sbjct:  157 AFMCGREPNFELSEEVIRELKQQSWEEFL 185
The following BLAST results are available for this feature:
BLAST of EY660343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ERFL1_ARATH4.834e-3141.90Ethylene-responsive transcription factor-like prot... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660343 ID=EY660343; Name=EY660343; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGAGCCAGCCAGCCAGCCACCCACACAACACAACACAAGT
CACAAATCTCTCATTTAAAACATACAAAGCTTTAGCCACCTTCCCCTTTC
CGTAATCCTAATCCTCTCCTGTCTCTCTCTCTCTCTCCCCCCCTCGGTTT
TTACGCTCTCTAAACCACCAGGGTCAGCAGGAATTCAGATTCTTAGGCAT
TCTCTGTTTAATCTGTTTTTGGTGATCCTAGAAGCCAACGGTATATGGGA
AGAGACACCAACTAGGTCATTGTGCATTGTTAGCAATATTTGGATCCATC
ATGGTGAGTTTACGAAGGCGCAAGCTCCTGGGACTCTGCTCTGGAAAAAG
TTCTTTTGTGGCTCCTCTTCCTAGGACTTCTGAAAATGGTAATGCTCCAG
AGAATTCAACCCAAAATATCAGACCTATCAGTCTGCGTCCTAGTTCATTG
GATAATGTCAGCCTGCAAAGAGGGATAGCTGTTGAAAAAGAAGGACCTGC
ATCATCCAATGTGTCTGGTGCAAGCTCTCCAGAACAGCGGAGTAAAAAAC
CAAAAGAGCAGCATGTTGAAAATGAGCAGCATTTTCCTTCATTTTCAGGG
CTACCTATCAAACGCAGAAAGCGACATAGGAGGAAGCAAATTCAAAACCA
GGAACCGTGTCTAATGAGAGGTGTCTACTTCAAAAATATGAAATGGCAGG
CAGCAATAAAAGTGGACAAGAAAACAATCCACTTGGGGACTGTTGGNTCA
CAAGAGGAGGCTGCTCGTTTGTATGATAGGGCGCTTTCATGTGTGGGAAG
GGAGCCCACTTTGAGCTCTCAGAAGAGAGAAAGCAGAACTANGCANTTCA
GTGGGATGAATTTCTGGCTTCACTCGCCGNTCATCACTC
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