EY660255

Overview
NameEY660255
Unique NameEY660255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9639 contig Csv1_Contig9639:685..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PL+NLVDHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  220 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  165 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK PLENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  214 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of EY660255 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.597e-16
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3
Query:   39 LXGFFVQAIVTGK*PLENLVDHLADPVNNNAWAYATNFVPGK 164
            + GFFVQAIVTGK P+ENL DHLADPVNNNAWAYATNFVPGK
Sbjct:  233 MFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
The following BLAST results are available for this feature:
BLAST of EY660255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB27_TOBAC3.410e-1690.48Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB29_MAIZE4.454e-1690.48Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC4.454e-1690.48Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL4.454e-1690.48Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC4.454e-1690.48Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ4.454e-1690.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA4.454e-1690.48Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ4.454e-1690.48Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA4.454e-1690.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY7.597e-1688.10Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660255 ID=EY660255; Name=EY660255; organism=Citrus sinensis; type=EST; length=321bp
CAGGCTTCCGCAACAATGGATTGCCGAACAAAAGGGTTCTGNTTGGNTTC
TTCGTTCAGGCCATTGTCACCGGCAAGTGACCGCTAGAGAACTTGGTCGA
CCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATT
GGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAA
CATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATT
TTAAAAAAAAAAAAAAAAAAA
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