EY660252

Overview
NameEY660252
Unique NameEY660252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig798 contig Csv1_Contig798:54..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 398.282 bits (1022), Expect = 3.077e-110
Identity = 202/265 (76.23%), Postives = 235/265 (88.68%), Query Frame = 3
Query:   36 NPAEIKALSFLETTRSYHPLPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNL 815
            +PAE KA+SFL+T+R ++P+PKLSGGF L+R++     FG+ V+CS      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKF VVALAAGSN+TLLADQV+RFKP +VAVRNESL++E+KEALA+++ K EI+ GEQGVIE ARHP+AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA+KHN+KILPADSEHSAIFQCIQGLPE ALR+IILTASGGAFRDWPV  +K +
Sbjct:    8 SPAESKAISFLDTSR-FNPIPKLSGGFSLRRRNQGRG-FGKGVKCSVKVQQQQQPPPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLANKHNVKILPADSEHSAIFQCIQGLPEGALRKIILTASGGAFRDWPVEKLKEV 270          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 380.563 bits (976), Expect = 6.639e-105
Identity = 197/263 (74.90%), Postives = 222/263 (84.41%), Query Frame = 3
Query:   39 PAEIKALSFLETTRSYHPLP--KLSGGFPLKRKDNATATFGRIVQCSAQG--PPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNL 815
            P EIK LSFL++++S + L   K  GGF  KRKD+   T  + V CSAQ   PPPAWPGRA  E  R TW+GPKPISV+GSTGSIGTQTLDIVAE+ DKF +VALAAGSN+TLLADQVK FKP++V+V++ESL+ E+KEALA  E+ PEI+ GEQG+IE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA KHN+KILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRD PV  +K +
Sbjct:    3 PTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSG-CTAAKRVHCSAQSQSPPPAWPGRAFPEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKPKLVSVKDESLISELKEALAGFEDMPEIIPGEQGMIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKEV 264          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 375.17 bits (962), Expect = 2.789e-103
Identity = 191/262 (72.90%), Postives = 216/262 (82.44%), Query Frame = 3
Query:   30 VKNPAEIKALSFLETTRSYHPLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNL 815
            V  P ++ A+SFL++ R      +L    P + +D    +  R      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKF VVALAAGSN+TLLADQVK FKP++VAVRNESL+DE+KEALA+ + KPEI+ GEQGVIE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA KH +KILPADSEHSAIFQCIQGLPE ALRRIILTASGGAFRDWPV  +K +
Sbjct:    6 VSFPGDLAAVSFLDSNRG-GAFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVDKLKEV 266          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.397e-70
Identity = 133/188 (70.74%), Postives = 159/188 (84.57%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMK 809
            K IS+LGSTGSIGTQTLDIV ++ D+F VV LA  SN+ LLA QV++F+P++VA+ +ES L  +K+A+A+++  P ILAGEQGV E ARH DA +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+  LRRIILTASGGAFRDWPV  +K
Sbjct:    2 KKISLLGSTGSIGTQTLDIVNQYPDQFQVVGLATRSNVELLATQVQQFRPEIVAICDESKLGSLKDAIASMDYSPLILAGEQGVAEVARHGDAESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLIEKHGVKLLPADSEHSAIFQCLQGVPDGGLRRIILTASGGAFRDWPVEQLK 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.183e-69
Identity = 125/191 (65.45%), Postives = 163/191 (85.34%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I++LGSTGSIGTQTLDIVA++ D+F +V +AAG NI LL+ Q+++F+P++VA+ + + L ++K+A+A+V+ +P++LAGE GV+E A + DA +VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+PE  LRRIILTASGGAFRDWPV  +  ++
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEIVAIADPNQLSDLKDAIADVDPQPQLLAGEAGVVEVAAYGDAESVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPEGGLRRIILTASGGAFRDWPVEKLPEVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.308e-68
Identity = 126/191 (65.97%), Postives = 160/191 (83.77%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K IS+LGSTGSIGTQTLDIV +H DKF VV LA G+NI LL++Q+++F+PQ+VA+ NES L+++K  +++++  P ILAG++GVIE AR+ D+ +VVTGIVGCAGL PT+AAI AGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P   L++IILTASGGAFRD PV  +  ++
Sbjct:    2 KKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTPIILAGKEGVIEVARYGDSESVVTGIVGCAGLLPTIAAITAGKDIALANKETLIAGGPVVLPLVEKHRVKLLPADSEHSAIFQCLQGVPTGGLKKIILTASGGAFRDLPVEKLPQVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.805e-68
Identity = 127/188 (67.55%), Postives = 157/188 (83.51%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMK 809
            K I++LGSTGSIGTQTLDIV ++ D+F VV LA  +N  LLA Q+K+F+P++VA+  ES L+ IK+A+A+++  P +L GE GV+E AR+ D+ +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+  LRRIILTASGGAFRDWPV  +K
Sbjct:    2 KKITILGSTGSIGTQTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEIVAICQESQLNTIKDAIASLDYSPILLTGEAGVVEVARYGDSESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLRRIILTASGGAFRDWPVEQLK 189          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.224e-66
Identity = 125/191 (65.45%), Postives = 159/191 (83.25%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K ISVLGSTGSIGTQTLDIVA++ D+F VV LAAG+N+ LL+ QV +F+P++VA+ N   L+ +KE+L++++  P IL GEQG++E A + DA +VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+PE  LR+I+LTASGG+FRD PV  +  ++
Sbjct:    2 KKISVLGSTGSIGTQTLDIVAQYPDQFQVVGLAAGNNVELLSAQVHQFRPEIVAICNLDHLEVLKESLSSLDYSPIILGGEQGIVEVAGYGDAQSVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVLPLIEKHGVKLLPADSEHSAIFQCLQGVPEKGLRKILLTASGGSFRDLPVEKLSTVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.599e-66
Identity = 121/191 (63.35%), Postives = 159/191 (83.25%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I+++GSTGSIGTQTLDIV ++ D+F +V LAAG+N+ +LA Q+++F+P++ A+ +E  L  +KEA+ +++ +P +LAGE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAG P VLPL  KH +K+LPADSEHSAIFQC+QG+P+  LR+I+LTASGGAFRDW V  + +++
Sbjct:    2 KAITLVGSTGSIGTQTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKIAAICSEDKLPALKEAIIDLDPQPILLAGEAGVIEVARYGDAQTVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGAPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKSGLRKILLTASGGAFRDWDVERLADVT 192          
BLAST of EY660252 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.075e-66
Identity = 120/191 (62.83%), Postives = 157/191 (82.20%), Query Frame = 3
Query:  246 KPISVLGSTGSIGTQTLDIVAEHEDKFIVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEVALRRIILTASGGAFRDWPVRNMKNLS 818
            K I+++GSTGSIGTQTLDIV+++ D+F +V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++ +P +L GE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+  LR+I+LTASGGAFRDW V  +  ++
Sbjct:    2 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQPILLGGEAGVIEVARYGDAETVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLRKILLTASGGAFRDWDVERLAEVT 192          
The following BLAST results are available for this feature:
BLAST of EY660252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_ARATH3.077e-11076.231-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI6.639e-10574.901-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ2.789e-10372.901-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_CYAA51.397e-7070.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACAM11.183e-6965.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MICAN1.308e-6865.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP83.805e-6867.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP71.224e-6665.451-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOSP71.599e-6663.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT6.075e-6662.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660252 ID=EY660252; Name=EY660252; organism=Citrus sinensis; type=EST; length=889bp
TTCCAAGACCCACGTGTCCGGGCATTGATGTCAAAAACCCAGCTGAAATC
AAGGCTCTCTCTTTCTTGGAGACAACCAGGTCATATCACCCCCTCCCCAA
GCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGT
TTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCA
GGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCC
AATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACA
TAGTTGCGGAGCATGAAGATAAATTCATAGTTGTGGCACTGGCAGCTGGT
TCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGT
AGTTGCTGTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGG
CTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATT
GAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGG
TTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATA
TAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTT
CCTCTAGCTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACA
TTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTGAGGTTGCACTTCGGC
GCATTATTTTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCCGTGAGA
AACATGAAGAATTTAAGTGGCTGATGCTTGGACCTTCTAACTGGAGTATG
GGAAAAAATTATTGTCATTCTGCTCCCTTTTTACAAGAT
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