EY660237

Overview
NameEY660237
Unique NameEY660237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.741e-75
Identity = 154/250 (61.60%), Postives = 170/250 (68.00%), Query Frame = 2
Query:   98 WALPLWX*XLKNKFVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIKRCHSPSKGWYPPMWFDHEGSWG---MSAFLGPRPPFTFGWPPSLANLV 838
            WALP          VISSNS+AVKILYPIFWGLMTLSTF NDLEPTS+WLEV+FSI +VLSGL+LFTLLIGNIQVFLHAVMAKKRKMQ+ CRDMEWWM               +ERQRW  +GGEDE+ELI DLP GLRR IKRYLC DL+ KVPLF           CDR +P VFSKD KIIRE DPV RM+FI+RGR+KR  S SKG       +  G  G   +S  L  R PF    PPS A  V
Sbjct:  386 WALP----------VISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCL--RRPFLDRLPPSSATFV 623          

HSP 2 Score: 23.483 bits (49), Expect = 1.741e-75
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:   69 VGRFLXLDVNGPFHYG 116
            V + + LD NGPF YG
Sbjct:  367 VNKPMCLDSNGPFRYG 382          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 8.021e-51
Identity = 114/243 (46.91%), Postives = 147/243 (60.49%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGR----------IKRCHSPSKGWYPPMWFDHEGSWGMSAFLGPRPPFTFGWPPSLANLV 838
            ++SS S   KIL+PIFWGLMTLSTFGN LE T+ W EV+F+I ++ SGL+L T+LIGNI+VFLHA  +KK+ M L  R++EWWM              +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF           CDRV+ L+F+K   I +E D V RMLF+VRG           +K C     G +     D   SW +      R PF    PPS + LV
Sbjct:  356 LVSSESRLEKILFPIFWGLMTLSTFGN-LESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSG---DELLSWCL------RRPFVERLPPSSSTLV 588          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.865e-37
Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRI 700
            V+ S+    K  Y  +WGL  LS  G +L+ +    E++F+I I +SGL+LF LLIGN+Q +L +   ++ +M++  RD E WM               YE+ RW    G +E  L+++LP+ LRR IKR+LCLDLLKKVPLF           CDR+RP++++++  +IRE DPV  MLF++RGR+
Sbjct:  332 VVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRL 518          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.918e-36
Identity = 74/188 (39.36%), Postives = 117/188 (62.23%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIK 703
            ++SS +  VK  Y ++WGL  LST G  LE +++ +E++FSI + +SGL+LF LLIGN+Q +L ++  +  +M++  RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C R++P +F++   ++RE DPV  MLFI+RGR++
Sbjct:  357 IVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLE 544          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.289e-36
Identity = 72/188 (38.30%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIK 703
            ++SS S   K  + ++WGL  LST G  LE +++  EV+FSI + ++GL+LF LLIGN+Q +L ++  +  +M++  RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P ++++   ++RE DPV  MLFI+RGR++
Sbjct:  372 IVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLE 559          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 9.519e-36
Identity = 72/188 (38.30%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIK 703
            ++SS +   K  Y ++WGL  LST G  L+ +++  EV+FSI I ++GL+LF LLIGN+Q +L ++  +  +M++  RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P ++++   I+RE DPV  MLFI+RGR++
Sbjct:  367 IVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLE 554          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.243e-35
Identity = 72/188 (38.30%), Postives = 115/188 (61.17%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIK 703
            ++SS +   K  Y ++WGL  LST G  L+ ++   EV+FSI I ++GL+LF LLIGN+Q +L ++  +  +M++  RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P +F++   I+RE DPV  M+FI+RGR++
Sbjct:  361 IVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLE 548          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.243e-35
Identity = 72/188 (38.30%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRIK 703
            ++SS +   K  + ++WGL  LST G  LE +++  EV+FSI + ++GL+LF LLIGN+Q +L ++  +  +M++  RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P +F++   ++RE DPV  MLFI+RGR++
Sbjct:  373 IVSSKNFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE 560          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.345e-34
Identity = 70/187 (37.43%), Postives = 111/187 (59.36%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRI 700
            ++ S+    K  Y  +WGL  LS  G +L  +    E++F++ I +SGL+LF LLIGN+Q +L +   ++ +M++  RD E WM               YE+ +W    G +E  L+++LP+ LRR IKR+ CLDLLKKVPLF           CD+++P++++++   IRE DPV  MLF++RG++
Sbjct:  333 IVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKL 519          
BLAST of EY660237 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.164e-33
Identity = 69/187 (36.90%), Postives = 111/187 (59.36%), Query Frame = 2
Query:  140 VISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLWCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLLKKVPLFPXXXXXXXXXXCDRVRPLVFSKDGKIIRERDPVARMLFIVRGRI 700
            V+ S     K  Y  +WGL  LS+ G +L+ +++  E+ F++ I ++GL+LF+ LIGN+Q +L +   +  +M++  RD E WM               YE+ +W    G DE  L+ +LP+ LRR IKR+LCL LL +VP+F           CDR++P++++++  I+RE DPV  MLFI+RG++
Sbjct:  345 VVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKL 531          
The following BLAST results are available for this feature:
BLAST of EY660237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CNGC2_ARATH1.741e-7561.60Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH8.021e-5146.91Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG10_ARATH3.865e-3741.18Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC5_ARATH1.918e-3639.36Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNGC9_ARATH7.289e-3638.30Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC8_ARATH9.519e-3638.30Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC7_ARATH1.243e-3538.30Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC6_ARATH1.243e-3538.30Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNG13_ARATH2.345e-3437.43Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC1_ARATH1.164e-3336.90Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-020-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660237 ID=EY660237; Name=EY660237; organism=Citrus sinensis; type=EST; length=954bp
CACTGGTACGCCTGCGGAACCCGTCCAGAANTCTTTCTCGACGCGGGTGT
ACGTAACACAACCTTCCTGTAGGGAGGTTTTTGNGCTTAGATGTTAATGG
GCCCTTCCATTATGGANCTGANCCCTGAAAAATAAGTTTGTNATTTCTAG
CAACTCTGTTGCCGTAAAAATCCTTTATCCAATCTTTTGGGGCCTCATGA
CTCTCAGCACTTTTGGCAATGATCTTGAGCCTACAAGTCACTGGCTTGAA
GTAATGTTCAGCATATGCATTGTACTCAGTGGACTAATGCTCTTCACTCT
GTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTAATGGCAAAGAAGC
GAAAGATGCAGCTGTGGTGCCGGGACATGGAATGGTGGATGAGGCGGAGG
CAGCTGCCGTCGCGTTTGAGACAGAGAGTTCGCCATTATGAGCGTCAAAG
ATGGGCAACAATGGGAGGAGAAGATGAGATGGAACTGATCAAAGACTTGC
CGGAAGGGCTGAGGCGTGGCATTAAACGCTATCTCTGCCTTGATCTCCTA
AAAAAGGTACCTTTGTTCCCCAACCTGGATGATCTCATTCTTGACAACAT
ATGTGACAGAGTTAGGCCCCTTGTATTCTCTAAAGATGGAAAGATCATCC
GAGAAAGGGATCCTGTGGCAAGAATGTTGTTCATTGTTCGTGGACGGATT
AAACGTTGCCACAGCCCTAGCAAAGGCTGGTACCCACCAATGTGGTTTGA
CCACGAAGGTTCCTGGGGGATGAGTGCTTTCTTGGGGCCTCGGCCCCCCT
TTACTTTTGGGTGGCCACCTTCTCTCGCAAATTTGGTTGTTTGGATCCCT
TAAACCTTTTGGGGGTTTCGCAAAAAACCTCCCTCCTTCCCAGTCATTTC
CGGGACAAATTGGTCCCCGAAGGGGGAAGAGACCGCGGAGATTCTTCCCC
AATT
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