EY660232

Overview
NameEY660232
Unique NameEY660232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.198e-23
Identity = 85/297 (28.62%), Postives = 129/297 (43.43%), Query Frame = 3
Query:    3 TRPKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNFILSRWLLNDLGQIEQFTRDTSGWIWET--TSP----CTTNYTMNATGVC-LNEKP-SNCRNGSEFFAPKK--------------GYMNVSFTGDQIDD--------------NAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGC 779
            T   + N    + A LL +GN ++R   ++  A   LWQSFDYP++ LLPEMKLG +LKTG   +L+SW S   PS G F   L      E  +W       RSG W   +F   PE       ++L    + F  N  E  +++   +N I SR  L+  G  ++ T + S  IW    +SP    C T         C +N  P  NC  G   F P+                   +S +GD                  +  + + +C  +C ++C+C+A+++  + + GTGC
Sbjct:  120 TNLTRGNERLPVVAELLSNGNFVMRD-SSNNDASEYLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDFSYKLETRSLPEFYLWHGIFPMHRSGPWNGVRFSGIPE------DQKLSYMVYNFTENSEEVAYTFRMTNNSIYSRLTLSSEGYFQRLTWNPSIGIWNRFWSSPVDPQCDTYIMCGPYAYCGVNTSPVCNCIQG---FNPRNIQQWDQRVWAGGCIRRTRLSCSGDGFTRMKNMKLPETTMAIVDRSIGVKECEKRCLSDCNCTAFANADIRNGGTGC 406          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 78/295 (26.44%), Postives = 128/295 (43.39%), Query Frame = 3
Query:    3 TRPKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCTTNYTMNATGVC-------LNEKP----------------------SNCRNGSEFFAPKKGY-----MNVSFTGDQIDDNAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGC 779
            T   + N  + + A LL +GN ++R    +  +G  LWQSFDYP++ LLPEMKLG +L+TG   +L+SW S   PS G F   L      E  +++   +  RSG W    F   PE       ++L    + F  N  E  +++   +N I SR  ++  G  E+ T   S  +W        ++  +   +C       +N  P                        CR  +       G+     M +  T   I D + + L +C  +C ++C+C+A+++  + + GTGC
Sbjct:  119 TNHTRGNERSPVVAELLANGNFVLRDSNKNDRSG-FLWQSFDYPTDTLLPEMKLGYDLRTGLNRFLTSWRSSDDPSSGDFSYKLQTRRLPEFYLFKDDFLVHRSGPWNGVGFSGMPE------DQKLSYMVYNFTQNSEEVAYTFLMTNNSIYSRLTISSSGYFERLTWTPSSGMWNVFWSSPEDFQCDVYKICGAYSYCDVNTSPVCNCIQRFDPSNVQEWGLRAWSGGCRRRTRLSCSGDGFTRMKKMKLPETTMAIVDRS-IGLKECEKRCLSDCNCTAFANADIRNGGTGC 405          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.861e-22
Identity = 84/309 (27.18%), Postives = 133/309 (43.04%), Query Frame = 3
Query:    3 TRPKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNFILSRWLLNDLGQIEQFTRDTSGWIWET--TSPCTTNYTMNATGVC-------LNEKP-SNCRNGSEFFAPKKGYM--------------NVSFTGDQIDD--------------NAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGCEFLVREVQFI 809
            T   + N  + + A LLD+GN ++R   ++  A   LWQSFDYP++ LLPEMKLG +LKTG   +L+SW S   PS G +   L      E  +        RSG W   +    PE       ++L    + F  N  E  +++   +N   SR  ++  G  E+ T   S  +W    +SP   N+  +   +C       +N  P  NC  G   F PK                   +S +GD                  +  + L +C  +C ++C+C+A+++  + + GTGC     E++ I
Sbjct:  120 TNVTRGNERSPVVAELLDNGNFVMRDSNSNN-ASQFLWQSFDYPTDTLLPEMKLGYDLKTGLNRFLTSWRSSDDPSSGDYSYKLELRRLPEFYLSSGSFRLHRSGPWNGFRISGIPE------DQKLSYMVYNFTENSEEAAYTFLMTNNSFYSRLTISSTGYFERLTWAPSSVVWNVFWSSP---NHQCDMYRMCGPYSYCDVNTSPVCNCIQG---FRPKNRQQWDLRIPTSGCIRRTRLSCSGDGFTRMKNMKLPETTMAIVHRSIGLKECEKRCLSDCNCTAFANADIRNRGTGCVIWTGELEDI 415          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.206e-21
Identity = 84/297 (28.28%), Postives = 128/297 (43.10%), Query Frame = 3
Query:    3 TRPKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNFILSRWLLNDLGQIEQFTRDTSGWIWET--TSP----CTTNYTMNATGVC-LNEKP-SNCRNGSEFFAPKK--------------GYMNVSFTGD--------------QIDDNAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGC 779
            T   + N  + + A LL +GN ++R   ++  A   LWQSFDYP++ LLPEMKLG NLKTG   +L+SW S   PS G F   L      E  + R      RSG W   +F   PE       ++L    + F+ N  E  +++   +N   SR  L   G  ++ T   S  IW    +SP    C T         C +N  P  NC  G   F P+                   +S +GD                  +  + + +C  +C ++C+C+A+++  + + G+GC
Sbjct:  119 TNLTRGNERSPVVAELLANGNFVMRD-SSNNDASEYLWQSFDYPTDTLLPEMKLGYNLKTGLNRFLTSWRSSDDPSSGNFSYKLETQSLPEFYLSRENFPMHRSGPWNGIRFSGIPE------DQKLSYMVYNFIENNEEVAYTFRMTNNSFYSRLTLISEGYFQRLTWYPSIRIWNRFWSSPVDPQCDTYIMCGPYAYCDVNTSPVCNCIQG---FNPRNIQQWDQRVWAGGCIRRTQLSCSGDGFTRMKKMKLPETTMATVDRSIGVKECKKRCISDCNCTAFANADIRNGGSGC 405          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.057e-17
Identity = 77/303 (25.41%), Postives = 135/303 (44.55%), Query Frame = 3
Query:    3 TRPKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNFILSRWLLNDLGQIEQFTRDTSGWIWET------TSPCTT-------NY-TMNATGVC---LNEKPSNCR-----------------NGSEFFAPKKGYMNVSFTGDQIDDNAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGCEFLVREVQ 803
            T   + N  + + A +L +GN ++R    +  +G  LWQSFD+P++ LLPEMKL  +LKTG   +L+S  S   PS G F   L P    E  +     + +RSG W   +F   P+  + ++          +++ +    + +   +N   SR  ++  G IEQ T + S  +W +       S C T       +Y  +N + +C       PSN +                 +GS     +   M +  T   I D + + + +C  +C  +C+C+A+++  + + GTGC     E++
Sbjct:  117 TNLTRGNERSPVVADVLANGNFVMRDSNNNDASG-FLWQSFDFPTDTLLPEMKLSYDLKTGLNRFLTSRRSSDDPSSGDFSYKLEPRRLPEFYLSSGVFLLYRSGPWNGIRFSGLPDDQKLSYLV--------YISQDMRVAYKFRMTNNSFYSRLFVSFSGYIEQQTWNPSSQMWNSFWAFPLDSQCYTYRACGPYSYCVVNTSAICNCIQGFNPSNVQQWDQRVWAGGCIRRTRLSGSGDGFTRMKNMKLPETTMAIVDRS-IGVKECEKRCLNDCNCTAFANADIRNGGTGCVINTGELE 409          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 74/290 (25.52%), Postives = 125/290 (43.10%), Query Frame = 3
Query:   36 ITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINL-KTGHEWYLSSWLSEQLPSPGAFRLGLNPNG-SRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNF-ILSRWLLNDLGQIE---------------QFTRDTSGWIWETTSPCT-----TNYTMNA-----------------TGVCLNEKPSNCRNGSEFFAPKKGYMNVSFTGDQIDDNAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGC 779
            +TA LL +GN ++R    + +    +WQSFDYP + LLPEMKLG NL  + +E  L+SW S   PS G F   L   G   E  + +     +R+G W   +F   P++   ++          F+ N  E  +S+   +N  I +R+ ++  G ++                F  DT   +++   P       T+ T N                  +G C+     +C  G  F   +   M +  T + + D   + L +C  KC  +C+C+ Y++  + + G+GC
Sbjct:  134 VTAELLANGNFVLRDSKTNDL-DRFMWQSFDYPVDTLLPEMKLGRNLIGSENEKILTSWKSPTDPSSGDFSFILETEGFLHEFYLLKNEFKVYRTGPWNGVRFNGIPKMQNWSYIDN------SFIDNNEEVAYSFQVNNNHNIHTRFRMSSTGYLQVITWTKTVPQRNMFWSFPEDTCD-LYKVCGPYAYCDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSCGEGDGFL--RMSQMKLPETSEAVVDKR-IGLKECREKCVRDCNCTGYANMDIMNGGSGC 412          
BLAST of EY660232 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16
Identity = 73/290 (25.17%), Postives = 123/290 (42.41%), Query Frame = 3
Query:   36 ITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLK-TGHEWYLSSWLSEQLPSPGAFRLGLNPNG-SRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKKSNF-ILSRWLLNDLGQIE---------------QFTRDTSGWIWETTSPCT-----TNYTMNA-----------------TGVCLNEKPSNCRNGSEFFAPKKGYMNVSFTGDQIDDNAGLALSDCHAKCWTNCSCSAYSS--VFDNGTGC 779
            +TA LL +GN ++R      +    +WQSFDYP + LLPEMKLG N   +G+E  L+SW S   PS G +   L   G   E  +       +R+G W   +F   P++   ++          F+ N  E  +S+   +N  I +R+ ++  G ++                F  DT   +++   P       T+ T N                  +G C+     +C  G  F   +   M +  T + + D   + L +C  KC  +C+C+ Y++  + + G+GC
Sbjct:  134 VTAELLANGNFVLRDSKTTAL-DRFMWQSFDYPVDTLLPEMKLGRNRNGSGNEKILTSWKSPTDPSSGDYSFILETEGFLHEFYLLNNEFKVYRTGPWNGVRFNGIPKMQNWSYIDN------SFIDNNKEVAYSFQVNNNHNIHTRFRMSSTGYLQVITWTKTVPQRNMFWSFPEDTCD-LYKVCGPYAYCDMHTSPTCNCIKGFVPKNAGRWDLRDMSGGCVRSSKLSCGEGDGFL--RMSQMKLPETSEAVVDKR-IGLKECREKCVRDCNCTGYANMDIMNGGSGC 412          
The following BLAST results are available for this feature:
BLAST of EY660232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SLSG6_BRAOL2.198e-2328.62S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SLSG2_BRAOA4.897e-2326.44S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SLSG3_BRAOL1.861e-2227.18S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SRK6_BRAOE1.206e-2128.28Putative serine/threonine-protein kinase receptor ... [more]
SLSG4_BRAOL1.057e-1725.41S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
SLSG0_BRAOA3.399e-1625.52S-locus-specific glycoprotein OS=Brassica oleracea... [more]
SLSG1_BRAOA5.798e-1625.17S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660232 ID=EY660232; Name=EY660232; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGAAGAAGGCTAATTCGGAGACTAATATCACAGCCACGCTG
CTAGATTCCGGAAACCTTCTTGTTAGACAGATTGGTGCCGATGGAATAGC
AGGGCCAATTTTGTGGCAGAGTTTTGATTATCCGTCAAACATGTTGCTGC
CCGAAATGAAACTAGGCATTAACCTGAAGACAGGACATGAGTGGTACCTT
TCTTCATGGTTAAGTGAGCAACTGCCTTCTCCAGGAGCCTTCAGACTTGG
CCTGAATCCCAATGGATCTCGCGAATTGATGGTGTGGCGGCGAGGGGAGG
TTTACTGGAGAAGTGGGGAGTGGAAAAATGGGAAATTTGAATTAGCACCT
GAGCTAACAGAGGGAACATTTACAAAGCAACTTGATGCATACCAATTCAG
GTTTGTGACAAATGAGAATGAGCGATACTTCTCTTATTCTAAAAAAAGCA
ACTTTATTCTGTCAAGGTGGTTGCTGAACGATTTAGGCCAAATTGAGCAG
TTCACACGGGATACGAGCGGATGGATATGGGAAACTACTAGCCCCTGTAC
TACTAATTATACAATGAATGCGACAGGTGTTTGCCTAAACGAAAAGCCTT
CAAACTGTAGGAATGGTTCAGAATTCTTCGCGCCGAAGAAAGGGTACATG
AATGTCAGTTTCACTGGTGATCAGATAGATGATAATGCAGGCTTGGCTCT
CAGTGATTGTCATGCGAAATGCTGGACCAATTGCTCTTGTAGTGCCTATA
GCTCTGTCTTTGACAATGGCACTGGATGTGAGTTTTTGGTCAGGGAAGTA
CAGTTTATTCCGGATGAAGGGTTTGGTCCGTGAATTTACTTGCCTTACTT
CGACCAAAGCATCCATGGTACAAGTAGTTATCATCGTGTTC
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