EY660227

Overview
NameEY660227
Unique NameEY660227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 71/146 (48.63%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  441 RLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFE-------TPNETAARLAAR-GLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWLM 854
            RLLL+ + + P     + +  + N+  FDTNMV               LNS +RC LR +RRF  +         N    RLAA  GLKK AL+QIPV +YG+  + +KAT+C ICL DF DGEKVRVLPKCNHG HVRCIDTWL+
Sbjct:    3 RLLLEPQANAPANANPKPKGGI-NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLL 147          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.676e-28
Identity = 66/139 (47.48%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  438 HRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWLM 854
            HRLLL++      T+GS      + + NFD NMV              GLNSI+RCA+RC    +      T A  A  GLKK  L++ PVA YG+  VKI AT+CAICL +F DGE+VRVLP CNH  H+ CIDTWL+
Sbjct:    2 HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLV 138          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.399e-26
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  465 STPPTNGSRTRSTVSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFA-FETPNETAARLAARGLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWLM 854
            + P T G    S   N A+ DT+MV              G+NS++RC LRC+RRF   E P +T A +A +G+KK AL+ IPV  Y    +K+KAT+C ICL DF++GE VRVLPKCNHG HV+CIDTWL+
Sbjct:   19 ANPRTLGDSV-SNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVA-KGIKKRALKVIPVDSYSPE-LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLL 146          

HSP 2 Score: 22.7126 bits (47), Expect = 1.399e-26
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  854 AHSSCPTC 877
            +HSSCPTC
Sbjct:  147 SHSSCPTC 154          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.075e-18
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  441 RLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFETPNET-AARLAARGLKKSALRQIPVAVYGAA-GVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWL 851
            +LL  T   +P    +   S    + NFD N+V              GLNSI+RCALRCS     E   +    RL   G+K+ AL+      Y     +    T+CAICL +F+  E+V++LP C+HG HVRCID WL
Sbjct:   29 KLLFHTHDQSP----TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWL 163          

HSP 2 Score: 25.0238 bits (53), Expect = 1.075e-18
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  848 VDAHSSCPTCGGHCWI 895
            + +HSSCPTC  HC I
Sbjct:  163 LSSHSSCPTC-RHCLI 177          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.811e-18
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  504 VSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFETPNE---TAARLAARGLKKSALRQIPVAVYGAA-GVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWLMH 857
            +++E N   N++              GL+ I+RCA R S RF    P     T    + +G+KK ALR  PV  Y     +     +C ICL DF+ GE++R+LPKCNHG HVRCID WL H
Sbjct:   48 ITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH 169          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  504 VSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFETPNETAARLAA---RGLKKSALRQIPVAVYGAAGVKIKATD--CAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWL 851
            +++E N   N++              GL+ I+RCALR S RF    P  + +       +G+KK ALR  PV  Y    + +   D  C ICL DF+ GE++R+LPKCNHG HVRCID WL
Sbjct:   48 ITHENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPE-MNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 167          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.306e-15
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  504 VSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAFETPN---ETAARLAARGLKKSALRQIPVAVYGAA-GVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWL 851
            +++E N   N++              GL+ I+RCA R +  F    P     T    + +G+ K ALR  PV  Y     +     +C ICL DF+ GE++R+LPKC+HG HVRCID WL
Sbjct:   49 ITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWL 168          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.482e-15
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  432 RPHRLLLDTEPSTPPTNGSRTRSTVSNEANFDTNMVXXXXXXXXXXXXXXGLNSIVRCALRCSRRFAF--ETPNETAARLAARGLKKSALRQIPVAVY-------GAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWLM 854
            RP RLL   E + PP   S            +++MV              GL ++VRCA    RRF    ++P+        +GLKK AL+ +P + +       GAA  +  +T+CAICL DF DGE++RVLP C H  HV CID WL+
Sbjct:    3 RPSRLL---ETAAPPPQPSEEMIAA------ESDMVVILSALLCALICVAGLAAVVRCAWL--RRFTAGGDSPSPN------KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 135          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.438e-13
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 3
Query:  498 STVSNEAN--FDTNMVXXXXXXXXXXXXXXGLNSIVRCAL--RCSRRFAFETPNETAARLAARGLKKSALRQIPVAVYGAAGVKI-KATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWL 851
            ST   EA+  F++++V              GL ++ RCA   R + R   +  +      A +GLKK  LR +P   Y        K  +CAICL +F  G+++RVLP+C HG HV CIDTWL
Sbjct:   14 STSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWL 136          

HSP 2 Score: 21.1718 bits (43), Expect = 2.438e-13
Identity = 6/8 (75.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  854 AHSSCPTC 877
            +HSSCP+C
Sbjct:  138 SHSSCPSC 145          
BLAST of EY660227 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  642 PNETAARLAARGLKKSALRQIPVAVYGAAGVKIKATDCAICLVDFMDGEKVRVLPKCNHGVHVRCIDTWL 851
            PN+T       GL +S ++ I V  Y      ++++DC++CL +F + E +R+LPKCNH  HV CIDTWL
Sbjct:  122 PNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 191          
The following BLAST results are available for this feature:
BLAST of EY660227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ATL3C_ARATH5.462e-3048.63RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL5A_ARATH6.676e-2847.48RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL5B_ARATH1.399e-2649.62RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1L_ARATH1.075e-1837.41RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL1J_ARATH2.811e-1840.16RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL1K_ARATH1.068e-1740.50RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL1I_ARATH1.306e-1536.67RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL2A_ARATH6.482e-1536.67RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]
ATL1R_ARATH2.438e-1336.59RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL3A_ARATH1.144e-1142.86RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660227 ID=EY660227; Name=EY660227; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGTCTTTATCTAGTTGGAATCACGACAGATGTTGCCATAAC
TCAAAGGCAGGGCAACTACAAGCCCGCACTTTGATGTCCCCACTCCATCT
CTTCATTTATCAATCACAAGTGAAACTCCGCCTTTAAGTTCCTCAAGCAA
CAACCAGCTAGCTATCAGACTTTCACAGATCGATCGTAGAAGCTCAATAT
CAAAACGAAAGTGAAGCTAACAAGTAAAGGCTTGGCTCAATACATGAGTG
TCATGAATTTCCTTCTTTCAGTATCCTTTGTGGTTCGATTCATAATTAAG
GGAAAAGCTCGGAACTATAGAAACGCAAGCCTGTTTGCATAAGCTCATCA
AATAGGCTTTAATTTGCAAAAGGGTACAAAGCTTTTGCACTCTCTGATCA
TTCAGTTCAAGCAATGGTGACACTCAATCATCGTCCACATCGCCTACTTT
TGGATACAGAACCAAGTACGCCGCCAACCAATGGAAGCAGAACGCGGAGC
ACGGTCTCCAATGAAGCCAATTTTGACACCAACATGGTGATAATACTAGC
AGCCCTGTTGTGCGCATTGATTTGTGCCCTAGGATTAAATTCAATAGTGC
GTTGTGCTTTGCGTTGTAGCAGAAGGTTTGCTTTTGAGACCCCGAATGAG
ACCGCAGCGCGACTGGCAGCCAGAGGACTTAAGAAGAGTGCATTGAGACA
GATTCCGGTGGCTGTCTATGGAGCTGCAGGCGTCAAGATTAAGGCTACAG
ACTGTGCAATTTGCCTTGTAGACTTCATGGATGGTGAAAAAGTCAGGGTG
TTGCCGAAGTGTAACCATGGGGTTCATGTACGGTGCATAGACACGTGGTT
GATGCACACTCGTCGTGTCCAACTTGCGGCGGTCATTGCTGGATCAC
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