EY660226

Overview
NameEY660226
Unique NameEY660226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660226_ssr113 microsatellite EY660226_ssr113:113..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7547 contig Csv1_Contig7547:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660226 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.144e-29
Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  298 ALFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFLEALK 603
            ++  M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI +   P+K+ VYDKDTFS DD MG+AE  I P + A K
Sbjct:  220 SMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK 321          

HSP 2 Score: 28.1054 bits (61), Expect = 4.144e-29
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  687 IVWTDGKLVQNLFLRLRNVEVGESEI 764
            I+  DGK+ Q++ LRL+NVE G  EI
Sbjct:  351 ILLEDGKVKQDISLRLQNVERGVLEI 376          
BLAST of EY660226 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.035e-26
Identity = 51/94 (54.26%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  310 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL 591
            M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+ +S  P+KL VYD DTFS DD MG+A+  I P +
Sbjct:  175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLI 268          

HSP 2 Score: 28.1054 bits (61), Expect = 3.035e-26
Identity = 16/47 (34.04%), Postives = 24/47 (51.06%), Query Frame = 3
Query:  624 KWNHCHENTAKQGELPC*RSHIVWTDGKLVQNLFLRLRNVEVGESEI 764
            KW   H+N      +      I   DGK+ Q + ++L+NVE GE E+
Sbjct:  287 KWLKSHDNPLIDDSI------INIVDGKVKQEVQIKLQNVESGELEL 327          
BLAST of EY660226 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.191e-22
Identity = 55/132 (41.67%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  301 LFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEEATLS 693
            L  M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+QK ++ VVK+N+NP WNE+L LS+  +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N L E++ ++
Sbjct:  173 LEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIIN 304          
The following BLAST results are available for this feature:
BLAST of EY660226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH4.144e-2954.90Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH3.035e-2654.26Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH4.191e-2241.67ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660226 ID=EY660226; Name=EY660226; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGATCGTGAATTGAACCATTGAAGATTAAAGGTAACAAATC
AAGCAGCCTCCAAAGCCCACCAGAATCACTTTACTCATTTAAGCAATTAT
GAAGTAATTGTCCAAGTCAAGTCAAGTTTCTAAGTCCTTCTGTTACAGCT
GCAATAAATATAAAATAATTGATGCACAGAATCAATAGCCCAATCAGCGC
GTGACTCTTTGCTTGTGATATAACATTTTCGCTTTACAGCATTAGCGCGA
GTGTTTTTGAAAGATAATAAAGGAAAGAAAAGTTTTAATCTTTCATAGCG
TTGTTTGCAATGGAGAATTTGATGGGTTTGCTCAGAGTTCATGTTCTGAG
AGGAGTGAATCTTGCCGTCAGAGATGTCGTCAGCAGTGATCCTTATGTTG
TGATCAAGATGGGAAAACAGAAGTTGAAGACTCGAGTTGTGAAGAACAAT
GTCAATCCTGAGTGGAATGAAGATTTAACCCTCTCTATTTCAGACTCTAA
TCTTCCAATCAAGCTTACAGTTTATGACAAAGACACATTCAGTCCAGATG
ACAAAATGGGAGATGCAGAATTTTACATCACTCCATTTTTGGAAGCTCTA
AAGATGCGATTGGAAGGCCTCCCAAATGGAACCATTGTCACGAAAATACA
GCCAAGCAGGGAGAACTGCCTTGCTGAAGAAGCCACATTGTCTGGACTGA
TGGTAAGCTTGTTCAAAACTTGTTTCTAAGACTTCGAAATGTTGAGGTGG
GTGAAAGTGAAATCAATTAGAGTGGATTGACATACCTGGNTCCAGGGGCC
TGTAGATGACATCTACGCACTCTCAGCTGCTAATAAGCATAGTGTACAAA
AAAGTCTCTGAGCATCATTAACGGGCTCAGNTGGAGTTTCTTCA
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