EY660224

Overview
NameEY660224
Unique NameEY660224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660224 vs. ExPASy Swiss-Prot
Match: CAO_ORYSJ (Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.192e-32
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 3
Query:  459 SLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGELE*QNTRQCATHLQQLHECLPSSRNK 662
            SLVKFLTP+SGLQGYWDPYPIDMEFRPPCMVLSTIGISKPG+LE ++T+QC+THL QLH CLPSSRNK
Sbjct:  383 SLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNK 450          

HSP 2 Score: 27.335 bits (59), Expect = 9.192e-32
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  662 TRLLYRMSLDFA 697
            TRLLYRMSLDFA
Sbjct:  451 TRLLYRMSLDFA 462          

HSP 3 Score: 21.1718 bits (43), Expect = 9.192e-32
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  706 QHVPCMQYL*RDFAEPVLS 762
            +HVP M  L   FAE VL+
Sbjct:  466 KHVPFMHILWSHFAEKVLN 484          
BLAST of EY660224 vs. ExPASy Swiss-Prot
Match: CAO_ARATH (Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.205e-31
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = 3
Query:  459 SLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGELE*QNTRQCATHLQQLHECLPSSRNK 662
            SLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISKPG+LE ++T+QCATHL QLH CLPSS+NK
Sbjct:  384 SLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNK 451          

HSP 2 Score: 30.0314 bits (66), Expect = 2.205e-31
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  653 KK*TRLLYRMSLDFASVL 706
            K  TRLLYRMSLDFA +L
Sbjct:  449 KNKTRLLYRMSLDFAPIL 466          
BLAST of EY660224 vs. ExPASy Swiss-Prot
Match: CAO_CHLRE (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.728e-15
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:  492 LQGYWDPYPIDMEFRPPCMVLSTIGISKPGE-LE*QNTRQCATHLQQLHECLPSSR 656
            L G+WDPYPIDM F+PPCM LSTIG+++PG+ +      QC  HL QLH C+PS +
Sbjct:  480 LSGFWDPYPIDMAFQPPCMTLSTIGLAQPGKIMRGVTASQCKNHLHQLHVCMPSKK 535          

HSP 2 Score: 25.7942 bits (55), Expect = 3.728e-15
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  662 TRLLYRMSLDF 694
            TRLLYRMSLDF
Sbjct:  538 TRLLYRMSLDF 548          
BLAST of EY660224 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.176e-13
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 3
Query:  492 LQGYWDPYPIDMEFRPPCMVLSTIGISKPGE-LE*QNTRQCATHLQQLHECLPS 650
            L G WDPYPI M F PPC+ LSTIG+S+PG+ +      +C  HL QLH C+PS
Sbjct:  309 LAGDWDPYPISMSFNPPCIALSTIGLSQPGKIMRGYKAEECKRHLHQLHVCMPS 362          

HSP 2 Score: 25.7942 bits (55), Expect = 4.176e-13
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 2
Query:  662 TRLLYRMSLDF 694
            TRLLYRMSLDF
Sbjct:  367 TRLLYRMSLDF 377          
The following BLAST results are available for this feature:
BLAST of EY660224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CAO_ORYSJ9.192e-3286.76Chlorophyllide a oxygenase, chloroplastic OS=Oryza... [more]
CAO_ARATH2.205e-3183.82Chlorophyllide a oxygenase, chloroplastic OS=Arabi... [more]
CAO_CHLRE3.728e-1557.14Chlorophyllide a oxygenase, chloroplastic OS=Chlam... [more]
CAO_DUNSA4.176e-1355.56Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660224 ID=EY660224; Name=EY660224; organism=Citrus sinensis; type=EST; length=910bp
TTCGTCGACCCACGCGTCCGCACACTTCCTTGCTCGCCAAGGGATGGAGC
GTTCCCAGGTTTGTTAAATTAATGATAATCACTGTAGCTTATGAATTGTT
GAAAATTTAAAAGATCTTTTTTTTGGGGGGGGGGGTGGATAATCTGTTTT
TATAATCAGCTTCAATTTTCTAAAGAAAGACTAATCAGTCACAAAAAAGA
GTGAAATGGGAGAAATCTCATCAGTTTGCATGAATTAACTGCATATTCTT
TTTATTGCTTCCTGAACATTTGAGAGGTAGAGATCATATAGCATGTGAAA
AAGAAAGGGTTAAGAGTGCTTAAGAAGAAGTTTAAAGAAATAACAATAAA
AACTAAAAAATAACATACCTAGGGATTTGAGAATCTGTCCTTACTCTCAA
ATGGAGAAAGAAGAAGAAATGACTTTGTTTTTGTATGTTATGCGTGGAAT
GAATCCTCAGCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGA
TACTGGGACCCTTATCCAATAGATATGGAATTTCGACCACCATGTATGGT
GCTATCAACCATTGGCATCTCAAAGCCTGGAGAACTGGAATGACAGAATA
CCAGGCAGTGCGCAACACATCTTCAACAGCTTCATGAGTGCTTACCTTCA
TCAAGAAATAAACCAGGTTGCTATACAGAATGTCCCTGGATTTTGCTTCT
GTGCTCAACATGTCCCATGCATGCAATATCTATGAAGGGACTTTGCAGAA
CCGGTATTAAGTTGGAATAATAACCCTTTCCTTTGCCATCAGTTGGATGT
CCATATCAAAGGAATGTGGGGTGATTCTTCCTACGGAATCGGGGATTCTA
ATATGGAAATTCCCGCCTACCTCTTGGAACTTGATCAACCGGGTTTGAAC
GAGGATTACA
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