EY660220

Overview
NameEY660220
Unique NameEY660220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8589 contig Csv1_Contig8589:943..1833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660220 vs. ExPASy Swiss-Prot
Match: TOLB_BURP8 (Protein tolB OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tolB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 60/213 (28.17%), Postives = 97/213 (45.54%), Query Frame = 2 
Query:  107 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS---FPSFSPDGGLIVFNHDFELNAG----IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 721
            RF+   T  Q ++  LE V SP   LRM     +   +       G+      + +  G    ++I+ SDG      +       + +WSP    V Y S    F+ ++  V I                ++P   +++  ++ GNN+ P+ SPDG+ L     R+G+  +F   AVN + +G +R+LT G  IDT PS+SP G  I F+S+R
Sbjct:  116 RFKLYDTVNQQSLGGLELV-SPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGNRYQLQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI---------------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG-LRRLTQGSSIDTEPSYSPDGQSIYFTSDR 304
The following BLAST results are available for this feature:
BLAST of EY660220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOLB_BURP89.579e-1128.17Protein tolB OS=Burkholderia phymatum (strain DSM ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660220 ID=EY660220; Name=EY660220; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAAAGGAGTTTTACCCGGTGACTGAGACACTCAACCCGA
ATTTCCACCATTACAACCCGTTTGTCTCTGCTAATTCAGAGTTCATCGGC
TACCATCGATTTCGAGGTGAGTCAACCGAAGGCCAGTCAACCATTCCTCA
TTTGGAACCGGTAGCGTCTCCGGTTAAAGAACTTCGAATGCTTAGACTCA
ACGGCTCATTCCCTTCCTTCTCCCCAGACGGTGGTTTGATTGTGTTCAAT
CATGATTTTGAATTGAATGCTGGAATCAAGATCGCTAAATCTGACGGTTC
TAAACGATGGACTCTAATCAAAGACCGTACAGCTTTCTACAACTCGTGGA
GTCCCACAGAGAAACACGTCATCTACACATCTACCGGTCCAATTTTTCAG
TCAGAAAGAGCGACGGTCCAGATTGCACGAGTTTCGTTTCAACTTGACCC
TTCCGATGATAACAATAGGGAAGAAATCCCATGTGATGTAAAGATCCTTA
CGAAAGAAGAAACAGGAAATAATGCCTTCCCCTCGTGCTCGCCAGATGGC
AAGTTTCTCGTATTTCGCTCAGGACGGTCCGGTCACAAGAATCTCTTCGT
ACTTGACGCTGTCAACGGCGAGTTTAACGGTGACATTCGTCAGTTAACTG
ATGGGCCGTGGATTGATACAATGCCAAGCTGGTCACCTAAAGGAGACCTC
ATAGCTTTTTCCTCCAACAGGCATAATCCAGATAACGTTGAAGCGTTCAG
TCTATATGTTATTAAACCCTGACGCTCTGGTCTAAGGCGAAATCATGTGG
CCCNGGCCTGAGGGTCANGTGACGTGGACAGGGAGAGGATTATCACGTCT
GCTTTAGTGCCGATGGGGAGTGGCTCTTGTCACGGCTATCT
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