EY660206

Overview
NameEY660206
Unique NameEY660206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660206 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.532e-62
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  309 FVNFTEIMSKNVDRSRKETEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPP-QYGAASQNTPK-----TXXXXXXXXXXXXGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFXXXXXXXXXXXXDLDLCPICRSFIQTRIKLY 746
            FVNFTEIM+KN  +S KETEFAL+ALMEIP QYKA +E N+LG + G   +R  LPPP + G++S N+PK     +             H R     PP SS SDN +CPICL++PKDMAF            DL +CPICR+ IQTRIKLY
Sbjct:  317 FVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          

HSP 2 Score: 117.857 bits (294), Expect = 2.532e-62
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 2
Query:   11 ADGLATRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQ 208
            ADG  TRSVDTE+GQLS QE+KTV+AIV+AS+ PLSI+LVGVGDGPWDMMREFDDNIPARAFDNFQ
Sbjct:  251 ADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQ 316          
BLAST of EY660206 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.245e-59
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  309 FVNFTEIMSKNVDRSRKETEFALAALMEIPSQYKAALEFNILGAQRGKAVDRVSLPPPQYGAASQNTPKTXXXXXXXXXXXXGHERVVGTAPPASSTSDNHVCPICLTDPKDMAFXXXXXXXXXXXXDLDLCPICRSFIQTRIKLY 746
            FVNFTEIMSKN D+SRKETEFAL+ALMEIP QYKA +E N+LG + G    R+ LPPP    +S ++ +               +++       SS  D  +CPICL++PK+MAF            DL +CPICR+ IQTRIKLY
Sbjct:  351 FVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIPNFEPSVPPYPFESKQM-------SSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489          

HSP 2 Score: 118.242 bits (295), Expect = 7.245e-59
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 2
Query:   11 ADGLATRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQ 208
            ADG  TRSVDTEHG+LS QE+KTV+AIVKAS  PLSI+LVGVGDGPWDMM+EFDDNIPARAFDNFQ
Sbjct:  285 ADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQ 350          
BLAST of EY660206 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 9.021e-17
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 2
Query:   50 GQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNF 205
            GQ+++ EK   +AI  AS YPLSII+VGVGDGPW+MM  FDDNIP R FDNF
Sbjct: 7452 GQVTN-EKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNF 7502          

HSP 2 Score: 35.8094 bits (81), Expect = 9.021e-17
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 3
Query:  309 FVNFTEIM--SKNVDRSRKETEFALAALMEIPSQYKAALEFNILGAQR 446
            FV+F ++M  + N D S     FAL ALMEIP QYKA  E  +L   R
Sbjct: 7504 FVDFHKVMFNAPNADAS-----FALNALMEIPDQYKAIKELGLLKHSR 7546          
The following BLAST results are available for this feature:
BLAST of EY660206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.532e-6251.32E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH7.245e-5947.95E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL9.021e-1767.31Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660206 ID=EY660206; Name=EY660206; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGCTGATGGGCTGGCGACGAGAAGTGTTGATACTGAGCATG
GCCAATTAAGCTCACAGGAAAAGAAAACTGTTGAAGCCATTGTTAAAGCG
AGTGAGTACCCCTTGTCGATTATATTAGTTGGGGTAGGAGATGGGCCATG
GGACATGATGAGGGAATTTGATGATAACATTCCTGCTCGAGCATTTGATA
ATTTTCAGGTAAGTATATCCTGGTAGCATGAGATTTGATATTTTCTGTGA
TTCTACTGCTTGTATCTTTGCCTTAGTTGAGAAATCCTTGTTACTTTCCC
TTCTGTAGTTTGTAAATTTTACAGAAATTATGTCAAAGAATGTTGACCGG
TCCAGAAAAGAAACTGAATTTGCTCTTGCAGCCTTAATGGAGATACCTTC
TCAGTACAAAGCCGCACTAGAATTTAATATATTGGGTGCTCAAAGAGGGA
AGGCTGTTGACAGGGTCTCCCTACCCCCTCCTCAGTATGGTGCAGCTTCT
CAAAACACTCCAAAAACTTCACGGTCAAGTAGCTTTCGTCCAAGTGCTCC
TTCAGGTCATGAAAGAGTTGTTGGCACAGCTCCACCTGCTAGTTCTACTT
CTGATAATCATGTTTGTCCTATATGCCTTACCGATCCAAAGGATATGGCC
TTTGGTTGTGGTCATCAGACTTGCTGTGGGTGTGGACAAGATCTAGATTT
ATGCCCCATTTGCCGGAGCTTCATCCAAACCAGAATAAAACTCTACTAAA
TGCCATCTTCTTGCCTGGATTTNTTTTTTTATACTGCTGCTGACTTATTA
GAGACTGGTAGTTATACCCAAGTCCCTTGGCTGAGGATCTTGCTGTTGGA
TTACTGGTGCCGTTTAAATATTCATGATCCATGGCTCCCACATAGAGGAC
CCTT
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