EY660202

Overview
NameEY660202
Unique NameEY660202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660202_ssr32 microsatellite EY660202_ssr32:32..45. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660202_ssr689 microsatellite EY660202_ssr689:689..703. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:15..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.897e-68
Identity = 144/249 (57.83%), Postives = 169/249 (67.87%), Query Frame = 3
Query:  123 EPW--LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAA---ASSDITAKATLQLSRASSIVMLIGYIAYLVF 842
            EPW  + ENG+  V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L+  L+N+QEVILGTKL++LF AIPLAI+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+EQ++DRKQADVN                  YAA    S+ +  K +L LSR SSIVMLI YIAYL+F
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIF 254          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 6.454e-68
Identity = 142/249 (57.03%), Postives = 170/249 (68.27%), Query Frame = 3
Query:  120 TEPW-LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXY---AAASSDITAKATLQLSRASSIVMLIGYIAYLVF 842
            TEPW + ENG+  + +K    E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L+  L+N+QEVILGTKL++LFPAIP AII    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIVMLI YIAYLVF
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVF 254          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.627e-61
Identity = 134/229 (58.52%), Postives = 150/229 (65.50%), Query Frame = 3
Query:  177 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAAS-----SDITAKATLQLSRASSIVMLIGYIAYLVF 842
            HGR  TAHNMSSSSLRKKSD  LV K+    LR  LAN+QEV L TKL+VLFPA+PLAI  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL   Q YDR Q+DV++                 YA A+     S  +A A+L LSRA S VML  Y+AYL F
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFF 247          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 2.154e-55
Identity = 119/242 (49.17%), Postives = 156/242 (64.46%), Query Frame = 3
Query:  132 LMENG---SVKVLSKEIRHGRTAHNMSSSSL-RKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFH 845
            L+ENG   S K  ++  R  R    +S+SSL RK+SDL L+S++R+  +RR L N+QEV+LGTKL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLRK Q +D +Q D+NS                 +   + +      + LSRASS VMLI Y+A+L+FH
Sbjct:   14 LLENGGGGSDKPTAETSR--RVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFH 253          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 118/223 (52.91%), Postives = 139/223 (62.33%), Query Frame = 3
Query:  183 RTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSD---ITAKATLQLSRASSIVMLIGYIAYLVF 842
            RTAHN+SSSSLRK SD +L+ K+    LR  LAN+ +V+L T+L +LFPA+ LAI      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR  Q YD KQA VN+                 YA  S D   ++  A L LSRA SI+MLI Y+AYL F
Sbjct:   31 RTAHNLSSSSLRKSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFF 253          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.090e-38
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 3
Query:  258 PCLRRCL----ANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSD-ITAKATLQLSRASSIVMLIGYIAYLVFHC-GHTGIF*SSXDS 884
            P LRR L    A +QEV+LGTKL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ KE+  D++QADV+                  Y +++ D I + + +QLSR+ +IVMLI Y   L+F    H  IF    DS
Sbjct:   59 PLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQLKTHRQIFELEEDS 273          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.342e-30
Identity = 83/190 (43.68%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  276 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVF 842
            L +I+ VI   KL++L P  PLAI+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS +MLI Y AYL F
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFF 252          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.111e-30
Identity = 82/190 (43.16%), Postives = 105/190 (55.26%), Query Frame = 3
Query:  276 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVF 842
            L + + VIL  KL++L P  PLAI+       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS +ML+ Y AYL F
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFF 252          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 5.000e-28
Identity = 73/193 (37.82%), Postives = 106/193 (54.92%), Query Frame = 3
Query:  267 RRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFA-EPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITAKATLQLSRASSIVMLIGYIAYLVF 842
            RR L +++ VIL  K++VL P  PLA++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  ++Q +++  A VNS                 +  +      K+ + LSR SS +ML+ Y +YL F
Sbjct:   58 RRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQY-GKSEVSLSRFSSCIMLVAYASYLFF 249          
BLAST of EY660202 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.982e-26
Identity = 75/184 (40.76%), Postives = 98/184 (53.26%), Query Frame = 3
Query:  294 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFXYAAASSDITA-KATLQLSRASSIVMLIGYIAYLVF 842
            VIL  KL++L P  PLAI+       + W F LSL+G+TPLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+Q +D++ A V+S                 Y    S++ A  + L LSR  S +ML+ Y AYL F
Sbjct:   82 VILSNKLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHY--THSEVHAGSSELALSRFISCIMLVAYAAYLFF 263          
The following BLAST results are available for this feature:
BLAST of EY660202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX3_ARATH2.897e-6857.83Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH6.454e-6857.03Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ2.627e-6158.52Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH2.154e-5549.17Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ1.000e-5252.91Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ9.090e-3842.79Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH5.342e-3043.68Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH9.111e-3043.16Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ5.000e-2837.82Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX6_ARATH7.982e-2640.76Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660202 ID=EY660202; Name=EY660202; organism=Citrus sinensis; type=EST; length=884bp
ATTTTCTCTCTCATCAATCTTTAATCAAAAAATATATATATATATTTTTT
ATTATTAATTGTTTCTATCCTTCGTGTTTTTTTTTTTCTTTCAATTGCAT
TTGTGAAAAAATGGCTTCGACTGAACCATGGCTGATGGAGAATGGCAGCG
TGAAGGTTTTGAGCAAGGAGATCAGACATGGAAGAACTGCACACAACATG
TCATCCTCCTCGTTGAGGAAAAAATCCGATCTTACCCTTGTCTCGAAAAT
TCGATTCCCTTGTCTTAGACGGTGTCTGGCTAATATCCAGGAGGTCATTT
TGGGGACTAAACTTTCAGTTCTCTTTCCCGCCATTCCTTTAGCCATAATC
GGCCAGTGTTTTGGATTTGCAGAACCATGGGTATTCGCTCTGAGCTTACT
AGGACTGACTCCTCTGGCTGAACGTGTCAGCTTCTTGACAGAGCAAATTG
CTTTCTACACTGGCCCAACAGTGGGGGGATTATTGAACGCGACATGCGGC
AATGCCACGGAGCTCATCATAGCAATTTTTGCCCTATACGAACGTAAAAT
TGACGTGGTCAAATATTCTCTTTTGGGTTCCATTCTCTCAAACCTTCTTC
TGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGATTGCCAATCTCAGAAAG
GAACAAAAATACGATAGAAAACAAGCCGATGTCAACTCGCTGCTGCTGCT
GCTGGCATTGCTGTGCCACATGTTACCATTGCTATTCNAATACGCTGCGG
CCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGCTATCAAGAGCCAGC
AGCATTGTAATGCTGATTGGGTACATCGCCTATCTCGTCTTCCATTGTGG
ACACACGGGAATTTTTTGAAGCTCANGAGATTCG
back to top