EY660200

Overview
NameEY660200
Unique NameEY660200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660200 vs. ExPASy Swiss-Prot
Match: RK5_ARATH (50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.137e-25
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 2
Query:   17 QSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPAN--LIRKKKLKAHHFDSKSKGK 226
            Q VFPEIR+DA+GK +GMDVCI+TTAK+D+EGQ+LLALMGMPFREGGG +   ++RKKKLK+HHFD+K KGK
Sbjct:  190 QGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261          
BLAST of EY660200 vs. ExPASy Swiss-Prot
Match: RK5_SPIOL (50S ribosomal protein L5, chloroplastic OS=Spinacia oleracea GN=RPL5 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.998e-23
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 2
Query:   17 QSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGK 226
            QSVFPEI+ + +GK +GMDVCITTTAKTDKE  +LL+LMGMPFREG GP+ L+RKKKLK+HHFD+K KG+
Sbjct:  150 QSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK-KGR 218          
BLAST of EY660200 vs. ExPASy Swiss-Prot
Match: RK5_ORYSJ (50S ribosomal protein L5, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL5 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.220e-16
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   17 QSVFPEIRYDALGKPKGMDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSKSKGK 226
            Q VFPEI Y+  GK  GMDVCI TTAKTD E  RLL L+GMPF E    + +IRKK+LK HHF SK +G+
Sbjct:  209 QGVFPEIPYEVGGKKNGMDVCIVTTAKTDNEALRLLTLLGMPFAEHIKSSVVIRKKRLKRHHFMSKGRGR 278          
The following BLAST results are available for this feature:
BLAST of EY660200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK5_ARATH7.137e-2573.6150S ribosomal protein L5, chloroplastic OS=Arabido... [more]
RK5_SPIOL2.998e-2372.8650S ribosomal protein L5, chloroplastic OS=Spinaci... [more]
RK5_ORYSJ1.220e-1661.4350S ribosomal protein L5, chloroplastic OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660200 ID=EY660200; Name=EY660200; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGAAAGACAGAGTGTTTTCCCGGAGATCAGGTATGATGCTC
TTGGCAAGCCCAAGGGAATGGATGTTTGCATTACAACAACCGCCAAAACT
GATAAAGAAGGCCAGAGACTTTTGGCTCTCATGGGGATGCCTTTCAGAGA
GGGTGGAGGTCCGGCAAATTTAATTCGCAAGAAGAAACTTAAGGCTCATC
ATTTTGATTCCAAATCAAAGGGAAAGTCAAGGAGATAAGCATTTTTTCTT
CTGAAGAGATGGGGGTATAGTTGTATCTAGTGTAATTGCTTTGTTGTTTG
AAACTTATGCTGCCAACAAGGGTGTTAAATAGATTCAATTTTTTCCGATT
CTGATTAATATGCATTTACAGTTGATGTTCACCTTGCTTGGTAATGTTTC
CATGTACTTTGTTCTCTCAAGGCAATGTCAAAGAACATTATTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAANANAAAAAAAAAAAAAAANNNNNNNNNNNNNANNNN
NNNNAANNNAANNNNANNNNNNGGGGGGGGCCGCTTTAAAAGAGACAAGT
TTCACAACGGGGGGTGGAAAGAAAAAACCCTTTATAAGGGCCCCTAAATT
AATTTCCGGGGCGGTTTTTAAACACGCGTGTTGGGAAAACCGGGGGGTCC
CCAAATTAATGCCTTGGAAAAAATCCCCTTTTCCCAGGTGGGGAAAATAA
AAAAGGCCCCCCCGATTCCCCTCTCAAAAATTGGGCACCCCTAAGGGAAA
GGGGACCCCCCCTTTACGGGCCCTTAAGCGGGGGGGGGGGGGTGTTCCCC
GAGGGGGACCTTTTTTTTGCGGCCCATAGCCGCGTCCTTTTTTTTTTTCC
CTCTTTTTAAGAGA
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