EY660198

Overview
NameEY660198
Unique NameEY660198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660198_ssr364 microsatellite EY660198_ssr364:364..378. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660198 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   13 GYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFLKLYADHMI 246
            G Y+FKSK+ QDEFSPEGLCKAAM+AL VKEEL +WPE  TR R WLT+ EA+E CRHPWM++AL +GF K + + M+
Sbjct:   94 GNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVEGFCKWHKEKMV 171          
BLAST of EY660198 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   13 GYYDFKSKTLQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFLKLYADHMISTSKEANHIDSPVHCQGIFD 306
            G ++F+SK+   E    G CK  MFAL V EELE WPE+  R+R WLTV EA+E CR+ WMQ ALE+    +  +  + T +E  H  S +  +   D
Sbjct:   98 GVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETVHDSSKLEEESQID 195          
BLAST of EY660198 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   13 GYYDFKSKT--LQDEFSPEGLCKAAMFALLVKEELESWPEQSTRQRSWLTVPEAIECCRHPWMQEALEKGFLKLYADHMISTSKEANHIDS 279
            G ++F+SK+  ++ +    G CK  MFAL VKEEL  WPEQ  R+R WL V EA+E CR+ WMQ ALE+ FL++ A+   ST +++  I S
Sbjct:   97 GVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEE-FLRVMAEEG-STKEDSLAISS 185          
The following BLAST results are available for this feature:
BLAST of EY660198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUD16_ARATH3.270e-2665.38Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH6.834e-1642.86Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH6.396e-1447.25Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660198 ID=EY660198; Name=EY660198; organism=Citrus sinensis; type=EST; length=488bp
CCACGCGTCCGGGGTTACTATGACTTTAAGAGCAAAACCCTTCAAGATGA
GTTTAGTCCAGAAGGTTTATGCAAAGCTGCCATGTTTGCTTTGCTTGTGA
AGGAGGAGCTCGAGTCTTGGCCTGAACAGAGCACACGACAAAGAAGCTGG
CTAACTGTCCCCGAGGCTATAGAGTGTTGCCGGCATCCATGGATGCAGGA
AGCCCTTGAGAAAGGCTTCCTGAAATTGTATGCAGATCACATGATAAGCA
CCTCAAAGGAGGCTAATCATATAGATTCACCAGTTCATTGCCAGGGGATA
TTTGATTAACTTTTGGGCGCTTAATAGAAAGACTAGTCAAAGCTGATTTT
GATGCTCTTTTGTTTTTATTTTATTTTATTTTTATTCAATGCAAGGTGTT
GGAGCTTAGATGATAATAAAAATGTGTGGGCTCTTTCAGGTGTTCACCTC
CGTTTATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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