EY660145

Overview
NameEY660145
Unique NameEY660145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1643 contig Csv1_Contig1643:10..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.041e-25
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  180 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 605
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 36.5798 bits (83), Expect = 2.041e-25
Identity = 18/51 (35.29%), Postives = 27/51 (52.94%), Query Frame = 2
Query:  689 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGILH-AEEXDXKLLIAIXFE 838
            PK +    S+  +     C  +L  T+D+QSGI+H AEE D K   +  +E
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYE 234          
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.041e-25
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  180 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 605
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 36.5798 bits (83), Expect = 2.041e-25
Identity = 18/51 (35.29%), Postives = 27/51 (52.94%), Query Frame = 2
Query:  689 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGILH-AEEXDXKLLIAIXFE 838
            PK +    S+  +     C  +L  T+D+QSGI+H AEE D K   +  +E
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYE 234          
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.041e-25
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  180 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 605
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          

HSP 2 Score: 36.5798 bits (83), Expect = 2.041e-25
Identity = 18/51 (35.29%), Postives = 27/51 (52.94%), Query Frame = 2
Query:  689 PKGKGCPHSSEDSCKCYICATRLTGTIDLQSGILH-AEEXDXKLLIAIXFE 838
            PK +    S+  +     C  +L  T+D+QSGI+H AEE D K   +  +E
Sbjct:  184 PKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYE 234          
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.268e-24
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  186 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 602
            A ++++   AI +   VL+   S  E +   +E A+T LSDL  +ENR  DL  L+ Q RP  +   KAK+AKIVR +ID  +    +  LQI +  + ++W   EKRTFLRQ +E +L +L  ++  YT+A+ L+ +L+
Sbjct:   13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLL 152          

HSP 2 Score: 40.817 bits (94), Expect = 6.268e-24
Identity = 19/54 (35.19%), Postives = 29/54 (53.70%), Query Frame = 2
Query:  677 IKKPPKGKGCPHSSEDSCKCYICATRLTGTIDLQSGILHAEEXDXKLLIAIXFE 838
            I+  PK +    +++ S     C   L G +DLQSGILHA++ D K   +  +E
Sbjct:  178 IRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYE 231          
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.320e-22
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  183 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 602
            Q +E  N  D   AI    ++L    S  +   +KE AI  L+ L  +  +   L  LL  +RPFF  I K KT KIVR  ID  + +P      I   KE +QW +   R +LRQR+E +L  L+ E+++Y  AL+ LT+L+
Sbjct:    6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLL 145          

HSP 2 Score: 41.9726 bits (97), Expect = 9.320e-22
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 2
Query:  677 IKKPPKGKGCPHSSEDSCKCYICATRLTGTIDLQSGILHAEEXDXKLLIAIXFE 838
            +K  PK +    S+  +     C  +L   ID+QSGILH+EE D K   +  FE
Sbjct:  171 LKNIPKARAALTSARTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFE 224          
BLAST of EY660145 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 2.040e-12
Identity = 34/143 (23.78%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  207 SDAISMLYRVLDDPSSSSEAL----------RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 605
            ++A  +   +LD  SS S A             +E +I EL  L         L   +     +     K+KT K+++ +I+   ++P + + QI +C++ +++ + EKR FL+  +  +LA L  + ++Y ++L L+  L++
Sbjct:   21 NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163          

HSP 2 Score: 34.2686 bits (77), Expect = 2.040e-12
Identity = 16/49 (32.65%), Postives = 23/49 (46.94%), Query Frame = 2
Query:  692 KGKGCPHSSEDSCKCYICATRLTGTIDLQSGILHAEEXDXKLLIAIXFE 838
            K K    ++  +     C T+    +DL SGILH E+ D K   +  FE
Sbjct:  193 KSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241          
The following BLAST results are available for this feature:
BLAST of EY660145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSD11_MOUSE2.041e-2536.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN2.041e-2536.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN2.041e-2536.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO6.268e-2437.86Probable 26S proteasome regulatory subunit rpn6 OS... [more]
PSD11_DICDI9.320e-2236.3626S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_YEAST2.040e-1223.7826S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660145 ID=EY660145; Name=EY660145; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGGATAGTCGTATCTCTTTCTCTCGTCTCAGTCTCCTCACT
GCTTGTTGAGTTTCGGTTCAGAAACCCTAATCTCCGCACTCATCTTCTCT
GTCTCTCTTCGACCGGAGTTGAATATTCCTGATTGAAATCATGTCTTCAT
CATATCTTCCTGCAACAACAGACTCTATTGCGCAGGCTAAAGAAGCCAGT
AATCCATCCGATGCTATATCTATGCTTTACCGTGTACTTGACGACCCTTC
TTCCTCTTCAGAAGCTCTCCGTGTAAAAGAATTGGCTATCACAGAACTAT
CTGACCTTCTTAGACAGGAGAACCGGGCTCAGGATCTTTGCAACCTTCTT
ACTCAGTTGAGACCCTTCTTTTCATTGATCCCTAAGGCTAAAACTGCTAA
AATTGTAAGAGGAATTATTGATGCTGTTGCCAAGATACCTGGGACATCTG
AACTCCAAATTGCTCTATGCAAAGAAATGGTACAATGGACCCGTGCGGAA
AAGCGTACATTTCTTAGGCAACGAGTTGAGGCTAGGCTTGCAGCTCTTTT
GATGGAGAGTAGGGAGTACACAGAGGCATTGACCCTGCTTACTAGCTTGG
TCAAAGAGGTGAGGAGATTAGATGACAAACTCCTTCTTGTAGACATAGAC
TTGTTGGAAAGTAAGCTACATTTTTCATTAAGAAACCTCCCAAAGGCAAA
GGCTGCCCTCACAGCAGCGAGGACAGCTGCAAATGCTATATATGTGCCAC
CCGGCTCACAGGCACTATAGATTTGCAGAGCGGAATTTTACATGCTGAAG
AGAANGATTANAAACTGCTTATAGCTATTTNCTTTGAGCATTTGAGGCTT
TCATGCTNCTGAAGACCCAGGNCTGNTTTAGTCTAAATACTGTTGCTTT
back to top