EY660133

Overview
NameEY660133
Unique NameEY660133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7418 contig Csv1_Contig7418:569..1461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660133 vs. ExPASy Swiss-Prot
Match: NICA_ARATH (Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.193e-77
Identity = 152/270 (56.30%), Postives = 185/270 (68.52%), Query Frame = 3
Query:   12 QKFPQAEFAPYPSINYEWNSMGSGIMLKAYDFPVFLLSESSTSMLQEVADKNEKVMNGYTTSVAEFDLVMQTTKAGTHDSESCLKEQTCLPLGGYSVWSSLPPINMSLSYQSKPIILLVASMDSASFFRDKSLGADSPIXXXXXXXXXXXXXXRVDGWNDLNKQLVFLVLTGEAWGYLGSRRFLHELDMQSDGVSGLNSSLIEMVLEIXXXXXXXXXXXXTFFTHTTGVSSAXNDALDAXKRAQVHLNLKTLKSYRL-ILKSWDPPSSLM 818
            ++FPQA+F+PY ++ Y+WNS  S IM + Y+FPV+LLSES  S + E+  K +     YT+ VAEF++VM+TTKAGTH+SE+CL+E TCLPLGGYSVWSSLPPI++S S   KP++L VASMD+ASFFRDKS GADSPI              RVDG ++L KQLVFLVLTGE WGYLGSRRFLHELD+ SD V+GL+++ IE VLEI            TFF H T VSS  N  LDA K AQ  L  K +K           PPSSLM
Sbjct:  138 KRFPQAQFSPYENVEYKWNSAASSIMWRNYNFPVYLLSESGISAVHEILSKKKMKHGTYTSDVAEFNMVMETTKAGTHNSEACLQEGTCLPLGGYSVWSSLPPISVSSSNNRKPVVLTVASMDTASFFRDKSFGADSPISGLVALLGAVDALSRVDGISNLKKQLVFLVLTGETWGYLGSRRFLHELDLHSDAVAGLSNTSIETVLEIGSVGKGLSGGINTFFAHKTRVSSVTNMTLDALKIAQDSLASKNIKILSADTANPGIPPSSLM 407          
BLAST of EY660133 vs. ExPASy Swiss-Prot
Match: NICA_DICDI (Nicastrin OS=Dictyostelium discoideum GN=ncstn PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 58/186 (31.18%), Postives = 92/186 (49.46%), Query Frame = 3
Query:   15 KFPQAEFAPYPSINYEWNSMGSGIMLKAYDFPVFLLSESSTSMLQEVADKNEKVMNGYTTSVAEFDLVMQTTKAGTHDSESCLKEQTCLPLGGYSVWSSLPPINMSLSYQSKPIILLVASMDSASFFRDKSLGADSPIXXXXXXXXXXXXXXRVDGWNDLNKQLVFLVLTGEAWGYLGSRRFLHEL 572
            ++P  +F  YP  N  WN  G G     + FP+F L   ++ +++ ++  N      Y    AE D  MQ    G  ++E+CL+   C P+GG S+WSS   +      QSKPIIL++  +D+ +FFRD + G D                  VD     +K+++F +   E WGY+GS  F+++L
Sbjct:  127 QYPIKQFGLYPDSNLNWNPNGDGFTYMNFPFPMFALELKTSIIIRNLSTINRD--GKYPAYGAELDSFMQ----GAINAETCLRRGFCEPVGGQSIWSSFSEV----IDQSKPIILVMLPIDATAFFRDLATGTDQSGYALTVLLSMLNTLQGVDK-TKWDKEVIFAMWNSERWGYVGSTNFVNDL 301          
BLAST of EY660133 vs. ExPASy Swiss-Prot
Match: NICA_MOUSE (Nicastrin OS=Mus musculus GN=Ncstn PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13
Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = 3
Query:   63 WNSMGSGIMLKAYDFPVFLLS-ESSTSMLQEVADKNEKVMNGYTTSVAEFDLVMQTTKAGTHDSESCLK------------EQTCLPLGGYSVWSSLPPINMSLSYQSKPIILLVAS-MDSASFFRDKSLGADSPIXXXXXXXXXXXXXXRVDGWNDLNKQLVFLVLTGEAWGYLGSRRFLHELD 575
            WN +G+G+  + + FP+FLL  E+ T ++++    +    NG   S     + + +       + +C++            E  C PL  Y+VWS L PIN S+  +    +++ A+ +DS SFF + + GA+S +              +      L++ ++F+   GE + Y+GS R +++++
Sbjct:  163 WNELGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLGQNGSAPSFPLCAMQLFSHMHAVISTATCMRRSFIQSTFSINPEIVCDPLSDYNVWSMLKPINTSVGLEPDVRVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALHKAPDVTTLSRNVMFVFFQGETFDYIGSSRMVYDME 347          
BLAST of EY660133 vs. ExPASy Swiss-Prot
Match: NICA_HUMAN (Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 48/189 (25.40%), Postives = 91/189 (48.15%), Query Frame = 3
Query:   60 EWNSMGSGIMLKAYDFPVFLL-SESSTSMLQEVADKNEKVMNGYTTSVAEFDLVMQTTKAGTH---DSESCLK------------EQTCLPLGGYSVWSSLPPINMSLSYQSKPIILLVAS-MDSASFFRDKSLGADSPIXXXXXXXXXXXXXXRVDGWNDLNKQLVFLVLTGEAWGYLGSRRFLHELD 575
            +WNS+G+G+  + + FP+FLL  E+ T ++++    +    NG   S   F L      +  H    + +C++            E  C PL  Y+VWS L PIN + + +    +++ A+ +DS SFF + + GA+S +              +      L + ++F+   GE + Y+GS R +++++
Sbjct:  163 QWNSLGNGLAYEDFSFPIFLLEDENETKVIKQCYQDHNLSQNG---SAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTFSINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDME 348          
BLAST of EY660133 vs. ExPASy Swiss-Prot
Match: NICA_RAT (Nicastrin OS=Rattus norvegicus GN=Ncstn PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 45/185 (24.32%), Postives = 86/185 (46.49%), Query Frame = 3
Query:   63 WNSMGSGIMLKAYDFPVFLLS-ESSTSMLQEVADKNEKVMNGYTTSVAEFDLVMQTTKAGTHDSESCLK------------EQTCLPLGGYSVWSSLPPINMSLSYQSKPIILLVAS-MDSASFFRDKSLGADSPIXXXXXXXXXXXXXXRVDGWNDLNKQLVFLVLTGEAWGYLGSRRFLHELD 575
            WN +G+G+    + FP+FLL  E+ T ++++    +    NG   S     + + +       + +C++            E  C PL  Y+VWS L PIN S   +    +++ A+ +DS SFF + + GA+S +              +      L + ++F+   GE + Y+GS R +++++
Sbjct:  163 WNELGNGLAYDDFSFPIFLLEDENETKVIKQCYQDHNLGQNGSAPSFPLCAMQLFSHMHAVISTATCMRRSFIQSTFSINPEIVCDPLSDYNVWSMLKPINTSGGLEPDVRVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALHKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDME 347          
The following BLAST results are available for this feature:
BLAST of EY660133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NICA_ARATH1.193e-7756.30Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3... [more]
NICA_DICDI1.135e-1931.18Nicastrin OS=Dictyostelium discoideum GN=ncstn PE=... [more]
NICA_MOUSE3.537e-1324.32Nicastrin OS=Mus musculus GN=Ncstn PE=1 SV=2[more]
NICA_HUMAN1.344e-1225.40Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2[more]
NICA_RAT5.107e-1224.32Nicastrin OS=Rattus norvegicus GN=Ncstn PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660133 ID=EY660133; Name=EY660133; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCAAAAGTTTCCCCAAGCTGAATTTGCTCCTTATCCAAGT
ATCAACTATGAGTGGAACTCAATGGGATCTGGTATTATGTTGAAAGCTTA
TGATTTTCCTGTATTCTTACTCTCTGAAAGTAGCACGTCGATGTTGCAGG
AGGTTGCTGATAAGAATGAGAAAGTGATGAATGGTTATACAACTAGTGTG
GCCGAGTTTGATCTGGTGATGCAGACAACAAAAGCTGGAACTCATGATTC
TGAATCTTGTTTGAAGGAACAGACCTGCCTTCCTTTAGGTGGATACAGTG
TTTGGTCTTCTCTTCCACCAATCAATATGTCATTGTCATACCAGTCCAAG
CCCATTATATTGTTGGTGGCATCTATGGATTCTGCATCTTTCTTCCGTGA
CAAAAGCCTTGGTGCAGATTCTCCAATATCTGGACTACTTTCATTGCTGG
CAGCAGTTGATGCTCTTTCTCGTGTTGATGGCTGGAATGACCTTAATAAG
CAGCTTGTTTTTCTAGTTCTCACGGGAGAGGCATGGGGTTACCTTGGTAG
CAGGCGATTTTTACATGAATTGGATATGCAGTCAGATGGAGTTAGTGGCC
TCAATAGCTCATTAATTGAGATGGTCTTGGAAATTGGATCTGTGGGGAAG
GGCTCCAGTCAAGGGGTCAAAACATTTTTCACGCACACAACAGGAGTTTC
ATCTGCTGNTAATGATGCATTGGATGCCNTTAAACGTGCTCAAGTTCACT
TAAATCTGAAAACATTGAAGTCTTATCGTCTAATTCTCAAATCCTGGGAT
CCTCCCTCATCCTTGATGGGCATTCTGAAAAGAACTCTCTTACGTCTGGG
ATTGTATTAGAGACTTTGATACAGCTTTCACCACAAATCTACA
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