EY660131

Overview
NameEY660131
Unique NameEY660131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660131_ssr641 microsatellite EY660131_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
EY660131_ssr689 microsatellite EY660131_ssr689:689..700. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.912e-49
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTS 509
            S REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQKYRE+EGEKT+
Sbjct:   18 STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.673e-49
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMGR 518
            LS REQDRFLPIANVSRIMKKALPANAKISKDAKET+QECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQ++RE+EGE+T +GR
Sbjct:   23 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.009e-45
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 500
            S REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKYREMEG+
Sbjct:   28 SVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.845e-45
Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 500
            REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKYREMEG+
Sbjct:   37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.207e-43
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMGR 518
            L+ REQDRFLPIAN+SRIMK+ LP N KI+KDAKET+QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLKVYL +YREMEG+    G+
Sbjct:   25 LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGK 128          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.332e-43
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  207 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 500
            L  REQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYL +YREMEG+
Sbjct:   26 LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.332e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMGRE 521
            +EQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLKVYL KYR+ EGEK +  ++
Sbjct:   35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 9.332e-43
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 3
Query:  210 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMGR 518
            S REQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVSEFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK+YL +YRE+EG+    G+
Sbjct:   18 SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.319e-40
Identity = 78/95 (82.11%), Postives = 90/95 (94.74%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 500
            REQDRFLPIAN+SRIMKKA+PAN KI+KDAKET+QECVSEFISF+T EASDKCQ+EKRKTING+DLL+AM TLGFEEYV+PLK+YL KYRE+ G+
Sbjct:   33 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127          
BLAST of EY660131 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.039e-38
Identity = 72/95 (75.79%), Postives = 87/95 (91.58%), Query Frame = 3
Query:  216 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 500
            +EQDRFLPIAN+ RIM++A+P N KI+KD+KE+VQECVSEFISFIT EASDKC +EKRKTINGDDL+W+M TLGFE+YVEPLK+YL+ YRE EG+
Sbjct:   21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115          
The following BLAST results are available for this feature:
BLAST of EY660131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB3_ARATH3.912e-4996.00Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB2_ARATH6.673e-4989.42Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB_MAIZE2.009e-4589.69Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ5.845e-4590.53Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYBA_ARATH3.207e-4377.88Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH9.332e-4383.67Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB7_ARATH9.332e-4380.39Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYB1_ARATH9.332e-4377.67Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ3.319e-4082.11Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB4_ORYSJ9.039e-3875.79Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660131 ID=EY660131; Name=EY660131; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGCCCATTTTACCCCTCTTGTTTTCTCATAATTCTCAATTC
CCCACTCTCCTGAAAAATCCAGTCTTTATTATCTGACAAAATCAAAATTC
GATCTTTCGATCTGGGTATTTTGAGAATTTTTTCTTTTTAAATATTGTGA
TGGCTGATTCGGACAACGATTCTGGGGGGCAAAACAACAGCAACGCAAAC
AGCGAGCTGTCGGCGAGAGAACAGGATAGGTTCTTGCCGATAGCTAATGT
AAGCAGGATAATGAAGAAGGCTTTGCCAGCGAATGCGAAGATATCAAAGG
ACGCTAAAGAGACAGTGCAAGAGTGTGTGTCGGAGTTTATAAGTTTCATA
ACTGGCGAAGCTTCTGACAAGTGTCAGCGCGAGAAGCGGAAGACGATCAA
CGGTGATGATTTGTTGTGGGCCATGACGACTTTAGGCTTCGAAGAGTACG
TGGAACCCTTGAAGGTCTATTTGCAAAAGTATAGGGAGATGGAGGGAGAG
AAGACTTCCATGGGGAGGGAGAATGACAGCGGTGATACCGGAGGCGGCAC
TGGATCATCCGGTGGCGGATCAGCTGCTGGTGGTGAAGCCAGTGATGGCC
GTCATGCTGGTGGGGGATACAATGGATGGATGTACCGTGGGATGATGATG
ATGCGACATCAAGACACGTTTATGGCTCTGGGGGATTTATCATCATCATC
TTCATCAGATGGGCGCTGGAATAAGTGGGTCCCCCGCTGCATCGATTCTG
CCTCCCCAAAGGCGGCGGAGCAACCATGGAGTTATTAGGCAAGTAGGTCT
ATTTCGACCTTCGGCTCTGGAACTTTAATGGTTTATTGCACCACCTAAAT
TGTTCCTAAATTCTATTAAAAACGCACCTGT
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