EY660115

Overview
NameEY660115
Unique NameEY660115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.538e-64
Identity = 118/156 (75.64%), Postives = 137/156 (87.82%), Query Frame = 2
Query:   68 ATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            A A I+GLTPCK+SKQFAKREK Q+KKL++SLKLYAP+SAPALA+ A +EKTKR  DNYGK GLLCGSDGLP LIV+GDQRHWGEFITPG+LFL IAGWIG VG+SYLIAISG+KKPAMKEII D  LASR+++RG  W VAAY+E +NG+L+ KD
Sbjct:   65 AVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKD 220          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.329e-64
Identity = 121/157 (77.07%), Postives = 135/157 (85.99%), Query Frame = 2
Query:   56 PHSVATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELV 526
            P   A+A I+GLTPCKESKQFAKREK  LKKL++SLKLYAPDSAPALAIKATMEKTKR  DNYGK GLLCGSDGLP LIVSGDQRHWGEFITPG+LFL IAGWIG VG+SYLIAI  +KKP  KEII D  LA++L++RG SW VAAY+E +NGEL+
Sbjct:   72 PALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.376e-62
Identity = 120/153 (78.43%), Postives = 130/153 (84.97%), Query Frame = 2
Query:   68 ATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELV 526
            A A I GLTPCKESKQFAKREK  LKKL+ SLKLYA DSAPALAIKATMEKTK+  DNYGK GLLCGSDGLP LIVSGDQRHWGEFITPG+LFL IAGWIG VG+SYLIAI  +KKP  KEII D  LAS L++RG SW VAAY+E++NGELV
Sbjct:   75 AMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.103e-62
Identity = 117/156 (75.00%), Postives = 134/156 (85.90%), Query Frame = 2
Query:   68 ATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            A A I GLTPCKESK FAKREK  +KKL +SLK YAPDSAPALAI+AT++KTKR  +NYGK GLLCGSDGLP LIVSGDQRHWGEFITPG+LFL IAGWIG VG+SYLIA+SG+KKPAM+EII D  LA+R++ RG  W VAAY+E+ING+LVV D
Sbjct:   75 AAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.892e-37
Identity = 84/162 (51.85%), Postives = 107/162 (66.05%), Query Frame = 2
Query:   62 SVATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLI----VSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            S A A I GLTPC ESK +AK EK +LK L+  LK Y  DSAPA+A+KATME+TK    NY K GLLCG+DGLP LI    ++    H GE   P   FL +AG+IG VG+ YLIA+ G+ KP  KEII D  LA++L ++G  W +AA +E+  G L+ K+
Sbjct:   58 SAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.407e-35
Identity = 76/164 (46.34%), Postives = 100/164 (60.98%), Query Frame = 2
Query:   44 FCYQPHSVATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            FC QP + + A + GL PCK SK+F +R    +KKL++ L  Y P++ P LA++  + KTK     YG  GLLCG+DGLP LI  G   H GEF+ PGL FL IAGWIG VG++Y+   S   KP  KEII D  +A   +  G  W  AA+KE  +G L+ K+
Sbjct:   13 FCLQPVA-SHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.737e-34
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 2
Query:   65 VATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            +A A + GL PCK+S  F KR  + +KKL+  L  Y  D+ PALA+   +EKTK     YG+ GLLCG+DGLP LI  G     G+F+ PGLLFL I GWIG VG+ YL++++   KP  KEII D  LA + +  G +W +AA++E  +G+L+  +
Sbjct:   17 IANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASN 173          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.097e-34
Identity = 78/174 (44.83%), Postives = 106/174 (60.92%), Query Frame = 2
Query:   17 SLHPLNFPQFCYQPHSVATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKDR 538
            S++P+N         S+A     GLT C+ES  F KR  + +KKL+T L  Y  ++ PA+A++  + KTK   + Y K+G+LCG+DGLP LI  G   H GEF+ PG+LFL I GWIG VG+ YL  IS   KP  KEII D  LA +    G +W +AA KE+ +GELV  ++
Sbjct:   16 SINPIN---------SLAEVETAGLTKCQESPAFTKRLNNSVKKLETRLAKYDANTPPAIALQTQIIKTKIRFNKYAKSGILCGTDGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNK 180          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.952e-33
Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 2
Query:   65 VATAYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELV 526
            V  A + GL PCK+S  F KR  + +KKL+  L  Y  ++ PALA+   +EKTK     YG+ GLLCG+DGLP LI  G     G+F+ PGLLFL I GWIG VG+ YL++++   KP  KEII D  LA + +  G +W +AA++E  +G+L+
Sbjct:   21 VVNAEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174          
BLAST of EY660115 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.831e-31
Identity = 70/154 (45.45%), Postives = 97/154 (62.99%), Query Frame = 2
Query:   74 AYITGLTPCKESKQFAKREKHQLKKLKTSLKLYAPDSAPALAIKATMEKTKRGCDNYGKNGLLCGSDGLPDLIVSGDQRHWGEFITPGLLFLCIAGWIGRVGKSYLIAISGDKKPAMKEIISDDRLASRLVYRGMSWTVAAYKEMINGELVVKD 535
            A + GL PC +S  F +R K+  ++L+  LK Y P SAPA A++  ++KT++  D Y  +GLLCG+DGLP LI  G   H GEF  PGLLFL IAG+IG  G+SYL A++       KEII D  +A + V +G  W +AA +E  +G+L  +D
Sbjct:   25 ADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARD 178          
The following BLAST results are available for this feature:
BLAST of EY660115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSAF_ARATH2.538e-6475.64Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR4.329e-6477.07Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL2.376e-6278.43Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU3.103e-6275.00Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE5.892e-3751.85Photosystem I reaction center subunit III, chlorop... [more]
PSAF_GUITH9.407e-3546.34Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORYE2.737e-3445.86Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GRATL6.097e-3444.83Photosystem I reaction center subunit III OS=Graci... [more]
PSAF_PORPU3.952e-3346.10Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA4.831e-3145.45Photosystem I reaction center subunit III OS=Cyano... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660115 ID=EY660115; Name=EY660115; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGGGGTTTCTCTCCACCCCTTGAACTTTCCTCAATTCTGCT
ATCAACCCCACAGCGTCGCAACTGCCTACATCACCGGCCTCACCCCATGC
AAAGAGTCCAAACAATTCGCCAAGCGCGAGAAGCATCAGCTCAAGAAGCT
CAAGACTTCACTAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAA
TCAAAGCCACCATGGAGAAGACGAAACGGGGGTGTGACAACTACGGGAAG
AACGGGTTGCTGTGCGGGTCAGATGGGTTGCCGGATCTGATTGTGAGCGG
AGACCAGAGGCACTGGGGTGAGTTTATCACTCCGGGGCTGTTGTTTTTGT
GCATAGCTGGATGGATCGGGCGGGTTGGCAAGAGCTACTTGATCGCCATT
AGTGGCGACAAGAAGCCGGCCATGAAGGAGATCATCAGTGATGATCGTTT
GGCTTCCAGGTTGGTCTACAGAGGTATGAGCTGGACTGTTGCTGCTTACA
AAGAGATGATTAATGGTGAACTTGTTGTCAAGGACCGTTTGTCATTCTAT
CTATTACGATCTCCTCTGGTAATCACAATTTGTTTGTTGTAATTATACAT
TCCCATTATTATTATGTGACATGTGTTGGTGCTGACTTGACTGTGTAATC
GAGGCCGGGTGATTTATCATGGAATTATCAATTACGGATGCACTTGGATA
AAAACAATAAAAAAGGCGGGCGATCTAGAAGAACCAACCTTACAACGCCC
GCATGCCACCTCATACCTCTCTTATACTGCCCCCTAATTCAATTAACTGG
ACGGCCATTTTATCATGCCAGACTGGCAAAACACTCGCGTACGCACTTCA
AAGCCTACATGACTTCCCCCTTGCCCGCTCGGCCA
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