EY660113

Overview
NameEY660113
Unique NameEY660113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10496 contig Csv1_Contig10496:23..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660113 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.867e-16
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   67 KPAPFTVGKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAK 240
            KPA FTV K+AARGLPSL  A+ SFKIVA G  KIKTDKP+GING MDLR+G+DASGRK K
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGK 73          
BLAST of EY660113 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.938e-14
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 1
Query:   67 KPAPFTVGKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAK 240
            KPA FTV K +ARGLPSL +   +SF+IVA G  KIKTDKP+G+NG MDLR+G+DASGRK K
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGK 74          
BLAST of EY660113 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1
Query:   67 KPAPFTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAK 240
            KPAPF+V K+A +GLPSLA++S  F++ A G  K+KTDKPYGING M LR+G+DASGRK K
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQK 69          
BLAST of EY660113 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.277e-12
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   79 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAK 240
            FT+ K++ +GLPSLA++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK K
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
BLAST of EY660113 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   79 FTVGKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGINGGMDLREGLDASGRKAK 240
            FT+ K + +GLPSL ++S  FK+VA G  K+KTDKPYGING M LR+G+DASGRK K
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
The following BLAST results are available for this feature:
BLAST of EY660113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBR_ARATH7.867e-1675.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM1.938e-1467.74Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC4.317e-1465.57Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU5.277e-1264.91Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC3.420e-1163.16Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660113 ID=EY660113; Name=EY660113; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGGGAGAGCACAGCAAAGCAAATGGCAGCCTCAGTGATGGC
TTCTTCGTTGAGCCTGAAACCAGCTCCTTTCACTGTGGGGAAATCAGCAG
CGAGAGGCCTTCCCTCTCTTGCTAAAACTTCATTCAAAATTGTGGCTAAA
GGCGGCAAGATCAAAACCGACAAACCCTATGGAATAAATGGTGGTATGGA
TTTGAGGGAAGGTCTTGATGCATCCGGCAGGAAGGCTAAGGTTTGTGTCC
AGCAATTTTGTCATTTTATTTATATACTCATTTTAGATAAATTCTTCTAG
CTGCTTCTCTCTCGAGTCCATTACTTCAATTTCTCTAAGTTTATTGTTTT
GCTAAAATATTTATAATTTTTTCATATGTTCTCTACTTGAGTATCAATTT
CTTTGTTGTCTTTGAAACTAATGCAAATTTCATCTTGTTTCATTGTAGTA
TAAATTCCTTAATCAACAACCTTTGAATTCAGGCGAATTATTTGTATATA
TATTTGGTAATTAACTGTTTCTTTGTGAACAGTTATATTCAATGCTAACT
GTTTTGCACCTTTATGCAAATCAAGCACTCATCAAGGAATTAATAATATT
TCATCATCGAACCAAGAGCATAAGAGTTCTTCCATCACAGTCAAAAGGCA
AATTCCAAAAATATTGAAAAAAAGAAAAGATGCGTTCGTATACGCTTACA
CTGATAAGGCGAGGTTGAGCAAATCGTTGATAGATTGATATGATATTAAA
AGGGGCTTCTAAAGGGAAGGACATGAAAAATATAATGGATTTCAATATTT
ATTTATATCTTTCCCTTGNCGGGTTTTTGATAATCTATATTCTGTTAACT
CTCAGCTTTTCAATTGAATACAGGGGAAAAGTGTTACAATTTGTTGACAA
TACGGTGCCA
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