EY660111

Overview
NameEY660111
Unique NameEY660111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660111_ssr376 microsatellite EY660111_ssr376:376..387. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660111 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.108e-17
Identity = 56/112 (50.00%), Postives = 68/112 (60.71%), Query Frame = 2
Query:  461 DDNSQGTTRFYPLELG*DPAFLKWHAESELIRRRWALSAVVGIFDGHTCNEIP*FDAVADPEAIGPFSFG*HL*TQLLLRIEMRTR*GLILCILSPIS*VM---TPWSRTAE 787
            D +  G   F PL LG DPAFLKW+ E+ELI  RWA+ AV+GIF G     IP F+A ADP A+ PFSFG  L TQLLL   + ++    +    P S  +   TPWSRTAE
Sbjct:   77 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESK--RWVDFFDPDSQSVEWATPWSRTAE 186          
BLAST of EY660111 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.108e-17
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  461 DDNSQGTTRFYPLELG*DPAFLKWHAESELIRRRWALSAVVGIFDGHTCNEIP*FDAVADPEAIGPFSFG*HL*TQLLLRIEMRTR*GLILCILSPIS*VM---TPWSRTAE 787
            D +  G   F PL LG DPAFLKW+ E+ELI  RWA++AV+GIF G   + IP F+A ADP AI PFSFG  L TQL+L   + ++    +    P S  +   TPWS+TAE
Sbjct:   72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESK--RWVDFFDPDSQSVEWATPWSKTAE 181          
BLAST of EY660111 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.302e-17
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  461 DDNSQGTTRFYPLELG*DPAFLKWHAESELIRRRWALSAVVGIFDGHTCNEIP*FDAVADPEAIGPFSFG*HL*TQLLLR--IEMRTR*GLILCILSPIS*VMTPWSRTAE 787
            D +  G   F PL LG DPAFLKW+ E+ELI  RWA++AV+GIF G   + IP F+A ADP AI PFSFG  L TQLLL   +E +            I    TPWS+TAE
Sbjct:   72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSID-WATPWSKTAE 181          
The following BLAST results are available for this feature:
BLAST of EY660111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4_SPIOL3.108e-1750.00Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC3.108e-1749.11Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC5.302e-1750.45Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660111 ID=EY660111; Name=EY660111; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGATATCATATCTATGGCGGATGCGACATCCGGTGCTGTGT
TCTACGGATTGAGTTCTTCATCATAAGTGGAGGTTACAAAAGCCAGGCTC
TTTTGGATGGTACAAATAGAGTGGCGAGATCTAAAAAGTCAATTGCTAGT
GCTCTCGCTCTTCCACCTAAGAAATCTTGAGATTCCTGCTGATCTGGGTG
GGGGATGCCTCATTAATCTCGAGTGGCTCCATGGATAGCAAGTATTCTCT
CTATCTAATATATTCTTTGCTTGGCTAATGATACTTCATATGCCCTCATC
GGACTCACATACGACTTGCTACCACTCATGATAGAACATAGCCTAAACTG
CAAACAAGATAAAAATCGATCAATGTATCTATCTATCCGATCTAGTATTT
TCTCACATTCTTAATATTCTACCATATAAGCTTCGTGCTCGTCCGGTGCG
GAGTCTGTGTGATGATAACTCCCAGGGGACTACGAGATTCTACCCACTTG
AGCTTGGATAAGACCCAGCATTCCTGAAATGGCACGCAGAATCAGAACTG
ATCCGCAGACGATGGGCACTGTCTGCAGTTGTTGGAATATTCGATGGACA
TACTTGTAATGAGATTCCATGATTCGATGCTGTAGCTGATCCTGAAGCCA
TAGGACCCTTCTCCTTCGGGTAACATCTGTGAACCCAGCTTCTCCTTAGG
ATTGAGATGAGAACAAGATGAGGGTTGATTCTTTGCATCCTGAGTCCGAT
CAGCTGAGTGATGACTCCCTGGTCTAGAACTGCTGAGATTGCTGCCATGC
GACTGGTGTACACGCTACCCTGGTGGAAGATGCTCTATCCTTATGTTCGG
TGAACTATTAGGATGAGTACTCATTCTGAACTGATAGATAGACGGC
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