EY660097

Overview
NameEY660097
Unique NameEY660097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:401..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 4.904e-58
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTDN+TLRMFCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPA+E  PEA TEVIGA
Sbjct:  128 KTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.405e-58
Identity = 110/134 (82.09%), Postives = 119/134 (88.81%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG K+E PADE + E   E++GA
Sbjct:  128 KTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.422e-57
Identity = 110/134 (82.09%), Postives = 118/134 (88.06%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTDNYTLR+FCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K+ERPADEP+ E  TEVIGA
Sbjct:  128 KTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 4.590e-56
Identity = 110/135 (81.48%), Postives = 119/135 (88.15%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTD YTLRMFCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:  128 KTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 5.995e-56
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 414
            KTTD+YTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK++RPADE   E PTE+IGA
Sbjct:  128 KTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 216.083 bits (549), Expect = 1.336e-55
Identity = 110/135 (81.48%), Postives = 121/135 (89.63%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPEAPTEVIGA 414
            KTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K++RPA+E + E PTEVIGA
Sbjct:  128 KTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.886e-55
Identity = 108/134 (80.60%), Postives = 118/134 (88.06%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ERP +E + E  TEV+GA
Sbjct:  128 KTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.075e-55
Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPADE + EA  E+ GA
Sbjct:  128 KTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.357e-52
Identity = 108/136 (79.41%), Postives = 119/136 (87.50%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQ-AASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 414
            KTTDNYTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIMI + A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:  128 KTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
BLAST of EY660097 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.404e-51
Identity = 99/123 (80.49%), Postives = 111/123 (90.24%), Query Frame = 1
Query:   13 KTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 378
            KTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM  QA+SCDLK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K++RPA++
Sbjct:  128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
The following BLAST results are available for this feature:
BLAST of EY660097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_HELAN4.904e-5883.5840S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR6.405e-5882.0940S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A1_VITVI5.422e-5782.0940S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH4.590e-5681.4840S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A1_ARATH5.995e-5680.7440S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CATRO1.336e-5581.4840S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA3.886e-5580.6040S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC5.075e-5579.8540S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA2.357e-5279.4140S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_ORYSJ3.404e-5180.4940S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660097 ID=EY660097; Name=EY660097; organism=Citrus sinensis; type=EST; length=666bp
CCACGCGTCCGCAAGACCACTGATAACTACACATTGAGGATGTTCTGCAT
TGGATTCACCAAGAGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
AGGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATACATTATTCTAATTTTCTTCAAATCCAGCTTAGAGAAGCATCTATCTT
TAAAAAAAAAAAAAAA
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