EY705684

Overview
NameEY705684
Unique NameEY705684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10218 contig Csv1_Contig10218:1..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.158e-84
Identity = 150/175 (85.71%), Postives = 161/175 (92.00%), Query Frame = 3
Query:   12 KVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL 536
            KVFWP VEFLGVV++TSYGCSYFLNLHKATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+GSYSYD VGK HDLYERLR+PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLERYGELDLFQPVMGEE P SVP LISRL
Sbjct:  316 KVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQPVMGEEGPASVPLLISRL 490          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.149e-78
Identity = 143/174 (82.18%), Postives = 155/174 (89.08%), Query Frame = 3
Query:   15 VFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPVMGEETPISVPFLISRL 536
            VFWPNVEFLGVV++TSYGCSYFLNLHKAT H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSLGSYSYD V K HDLYERLR+P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLERYGEL   +  M EE P SVP LISR+
Sbjct:  318 VFWPNVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERYGEL---EHEMEEEAPASVPLLISRM 488          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.361e-53
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 3
Query:   12 KVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQPV--MGEETPI---SVPFLISRL 536
            + FWPNVEFLG+V+ TSY C YFLNLHKATGH VLVYM AG LA+D+EK+SDEA ANF   QLKK+ PDA  P QYLV+ WGTD N+LG Y+YD VG   DLY RL  PVDN+FF GEA ++ + GS HGAF  G+ A+++C+  + ER G  +  + V  MG    +   +VP  ISR+
Sbjct:  318 RAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFERLGAWEKLKLVSLMGNSDILETATVPLQISRM 497          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 3
Query:    9 PKVFWP-NVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 458
            P VFW  +++  G +  D S+   +FL    AT  G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  481 PHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.803e-14
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 3
Query:    9 PKVFWP-NVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 458
            P VFW  +++  G +  D S+   +FL    AT  G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  481 PHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.169e-13
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 3
Query:    9 PKVFWPN-VEFLGVVS-DTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 428
            P VFW   ++  G ++ + S    +FL  + H  +G  VL+ + AG+ A + EK+    A +     LK I       +PD   PIQ   + WG+D    GSYS+  VG S   Y+ L   V D LFFAGEAT+ +YP ++HGA  +GL  A
Sbjct:  444 PHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPD---PIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREA 592          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL3_ARATH (Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.993e-13
Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 3
Query:    9 PKVFWP-NVEFLG-VVSDTSYGCSYFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAA 428
            P VFW  +++  G +  D +Y   +FL    A   G  +L+ + AG+ A   E M    A       L+ I      +   P+Q + + WG D  SLGSYS   VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF TGL  A
Sbjct:  467 PYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREA 616          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 50/153 (32.68%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   12 KVFW-PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-----------DNLFFAGEATSMSYPGSVHGAFSTGLMAA 428
            ++FW PN    G V  T+            +   VL+ + AG  A  +E ++D+       + LK I  + S   P + +V+ W +D  + GSYSY +VG S   Y+ L  PV             LFFAGE T  +YP +VHGA+ +GL  A
Sbjct:  669 RIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREA 821          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   78 FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELD 473
            F +    +G  +L+ + AG+ A + EK S           L+KI      +   P+Q + + WGTD  + GSYSY  +G S D Y+ L   V D +FFAGEAT+  YP ++HGA  +G   A +       R  ++D
Sbjct:  588 FYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVD 724          
BLAST of EY705684 vs. ExPASy Swiss-Prot
Match: LDL1_ARATH (Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   78 FLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELDLFQP 485
            F +    +G  +LV + AG  A   E +S   +       L+ I       +PD   P+Q L S WG D  S GSYSY  VG S D Y+ L   V +  +FFAGEAT+  YP ++HGAF +G+  A +  +RV  R        P
Sbjct:  578 FYSYSSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVVPD---PVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATMHGAFLSGMREAANI-LRVARRRASSSALNP 718          
The following BLAST results are available for this feature:
BLAST of EY705684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAO2_ARATH2.158e-8485.71Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH5.149e-7882.18Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO4_ARATH3.361e-5356.67Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
LDL3_ORYSJ1.803e-1435.63Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSI1.803e-1435.63Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL2_ORYSJ1.169e-1336.84Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LDL3_ARATH1.993e-1337.33Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LSDA_DROME4.441e-1332.68Possible lysine-specific histone demethylase 1 OS=... [more]
LDL1_ORYSJ4.441e-1333.58Lysine-specific histone demethylase 1 homolog 1 OS... [more]
LDL1_ARATH1.292e-1235.86Lysine-specific histone demethylase 1 homolog 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-046-F03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY705684 ID=EY705684; Name=EY705684; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGAAAGTGTTTTGGCCAAATGTGGAGTTCTTGGGGGTGGTT
TCAGATACATCATATGGGTGCAGCTACTTTCTAAATCTTCACAAGGCAAC
AGGTCACTGTGTCCTTGTTTACATGCCTGCCGGGCAGTTGGCTAGAGACA
TTGAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTTACGCAACTC
AAGAAGATCCTTCCTGATGCATCTTCCCCGATCCAATATCTTGTTTCTCA
TTGGGGCACAGATGCCAACTCGCTTGGGTCCTACAGCTACGATACAGTAG
GCAAATCCCATGATCTGTATGAAAGGCTAAGGATACCAGTGGACAACCTA
TTCTTTGCCGGTGAGGCAACAAGCATGAGCTACCCAGGGTCGGTTCATGG
TGCATTCTCGACTGGACTGATGGCTGCCGAGGACTGCCGGATGCGTGTTC
TGGAGCGTTATGGGGAATTGGACTTATTCCAGCCAGTAATGGGTGAGGAA
ACCCCGATTTCTGTCCCATTTTTGATCTCCCGTCTGTAACTTAAAAAGAG
GGCTGTCAGTTATACTAGAAAGTAATGGTAGTATATTGGTGTAGATTTAT
GTAAACACTGGGACTGATCTAGCTAACACATTGCTGCCCATTTGACTACT
GGCTGTGAGGGGAATGTTGTGAAAAACAACCATTTTCCCATTGACCAATC
AGTTGAATAATTGGCAAATGTGTATAAATTGCCATGTGTGGCATGTACCT
ATAGCATTTTGGACTTTGGACAAAATTATGTAATAACAAAATTTTCGGAA
GNANGAGTGCGCTTTGTTTGNGTGGTGGTGGGTTGTAGTAGAGTATGAAT
GATTATAGTCAAAAAAAAAAGGGC
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