EY660087

Overview
NameEY660087
Unique NameEY660087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660087_ssr827 microsatellite EY660087_ssr827:827..836. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.462e-49
Identity = 106/172 (61.63%), Postives = 123/172 (71.51%), Query Frame = 2
Query:   14 GHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLNDLCVGGSP---AFSDLAACGDFFDSFSQNSLELNRVGDMYDFSQVPYM 520
            GHEPRSSSSCAACKLLKR+C PTCIFAPYFRS +   FAKVHKVFGASNVSK+L EVPEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ+KM+ELQ DLAVAR RL  ++    S  + L+D     SP   AF DL    D        +L+      +YD  Q P++
Sbjct:    3 GHEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNNSQVSPLDD-----SPELAAFLDLVPYSDLMLLDGSTNLD----AYLYDLGQPPFV 165          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.417e-36
Identity = 77/128 (60.16%), Postives = 95/128 (74.22%), Query Frame = 2
Query:   32 SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY--TTPAASSCAVLNDLCVGGSP 409
            +S CAACK L+RKC+P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED VNSLAYEAEAR+RDPVYGC+GAI+ LQR++  LQ++L  A A LA Y  +T AA +   + DL     P
Sbjct:    9 NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVDLVFQPQP 136          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.186e-36
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCA 376
            + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+G I++LQ  + +LQQDLA A+  L++Y   AA+S +
Sbjct:   30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAS 145          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.200e-35
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 349
            ++S CAACK L+RKC P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+G I+LLQ ++ +LQ DL+ A++ L++Y
Sbjct:    6 TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.200e-35
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 349
            ++S CAACK L+RKC   C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED VNSLAYEAEARL+DPVYGC+GAI++LQR+++ LQ++L    A L RY
Sbjct:   36 TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCA 376
            + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+  I++LQR + +LQQDLA A+  L++Y   AA++ A
Sbjct:   35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAA 150          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCA 376
            + S CAACK L+RKC P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+  I++LQR + +LQQDLA A+  L++Y   AA++ A
Sbjct:   35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAA 150          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: IAL1_MAIZE (Protein IAL1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCA 376
            + S CAACK L+RKC P C+FAPYF  D P+KF +VH+VFGASNV+K++ E+   QRED +NSLAYEA+ R+RDPVYGC+G I++LQ  + +LQQDLA A+  L++Y   AA+S +
Sbjct:   30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASAS 145          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.491e-35
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 364
            SSS CAACK L+RKC   C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED VNSL YEAEARLRDPVYGC+G I++LQ ++ ++  DL  A+  LA Y  P A
Sbjct:    4 SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQA 115          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.955e-34
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 364
            +S+ CAACKLL+RKC   C+FAPYF    P+KF  VH+VFGASNV+KIL ++P +QREDTVNSL YEAEAR+RDP+YGC+G I+ LQ+ + ++QQDL  A+  L  Y  P A
Sbjct:    2 ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA 113          
The following BLAST results are available for this feature:
BLAST of EY660087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LBD21_ARATH9.462e-4961.63LOB domain-containing protein 21 OS=Arabidopsis th... [more]
LOB_ARATH2.417e-3660.16Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD6_MAIZE9.186e-3660.34LOB domain-containing protein 6 OS=Zea mays GN=LBD... [more]
LBD6_ARATH1.200e-3563.55LOB domain-containing protein 6 OS=Arabidopsis tha... [more]
LBD25_ARATH1.200e-3565.42LOB domain-containing protein 25 OS=Arabidopsis th... [more]
LBD6_ORYSJ1.567e-3560.34LOB domain-containing protein 6 OS=Oryza sativa su... [more]
LBD6_ORYSI1.567e-3560.34LOB domain-containing protein 6 OS=Oryza sativa su... [more]
IAL1_MAIZE1.567e-3557.76Protein IAL1 OS=Zea mays PE=2 SV=1[more]
LBD36_ARATH3.491e-3562.50LOB domain-containing protein 36 OS=Arabidopsis th... [more]
LBD10_ARATH2.955e-3459.82LOB domain-containing protein 10 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660087 ID=EY660087; Name=EY660087; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGGGGGACACGAACCTCGGTCAAGCTCATCTTGTGCAGCCT
GCAAGTTACTGAAAAGAAAATGCATTCCCACCTGTATTTTTGCACCTTAT
TTTCGGTCCGATGAGCCGAAGAAATTCGCCAAAGTACACAAGGTGTTTGG
AGCAAGCAATGTGAGCAAGATCCTGACGGAAGTTCCTGAAGAGCAACGCG
AGGACACCGTGAACTCGCTTGCGTATGAAGCTGAGGCTCGGCTTAGAGAC
CCCGTTTATGGGTGCATTGGTGCCATAGCTTTGCTGCAAAGAAAGATGAT
TGAGCTTCAGCAGGATTTGGCCGTTGCAAGAGCAAGGCTTGCTCGCTATA
CTACTCCTGCTGCTAGCTCTTGTGCCGTATTGAACGATCTTTGCGTCGGC
GGGTCGCCAGCTTTCAGTGATCTCGCTGCTTGTGGTGATTTTTTCGACAG
TTTTAGCCAGAATTCATTGGAATTGAATCGAGTTGGGGACATGTATGATT
TTAGCCAAGTCCCATATATGTAATTATCTGTGTTTCTGTTTCCAATCTAG
AATTTAGTTAGACTTATGTGGGAAAATATTGAATTTTATGAATAACTGTG
TGCAGAATCAATGTGCTTTTGCAGGGGAAATGAAACCAAATGATGAACTA
TTGCACTGTTTACTTACTTTAGGCAACAACACAAATACCATACATGGTAC
TAAGACTGAAAGCGTTTGATTTTTGAGTACTCCTCTACTGTAACCCACCA
GCAGTCACATGCTGGTGTACAAAAATCTTTGCCAAATTCCTTGAAACATG
ATCATGATGCNTGTGTGTTTTGTGCCTGTGTGTGTGCGTGTGTGTGCGTG
TTTNTGTTTGCTTGCCCCTTCTGTGGAGTTGTCCATCATTGAAATTGGTC
TTCCAACCGGAAAACAAAGGTTTTGAAATAAT
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