EY660083

Overview
NameEY660083
Unique NameEY660083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660083 vs. ExPASy Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.562e-50
Identity = 101/136 (74.26%), Postives = 106/136 (77.94%), Query Frame = 1 
Query:  193 DPALAFKGGGPYGAEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGXXXXXXXXXXXXXXXXNVTKANLSNANLEGALATGNTSFTGSNITGADFTDVPFTDDPRQYLCQPAHGANPT 600
            DPALAFKGGGPYG  VTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLGASFFDADLTG                NVTK NL+NANLEGA  TGNTSF GSNITGADFTDVP  DD R YLC+ A G N T
Sbjct:   77 DPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNAT 212

HSP 2 Score: 20.7866 bits (42), Expect = 1.562e-50
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  600 TRNATRDTLL 629
            T NATRDTLL
Sbjct:  213 TGNATRDTLL 222
The following BLAST results are available for this feature:
BLAST of EY660083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL15A_ARATH1.562e-5074.26Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-C12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660083 ID=EY660083; Name=EY660083; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCGGACACGTGTCCCAACCACTCTTCTACTTGACATGCCC
ACTTGTCTCCTTTGCAGGACACTCTTTTCCTCCCTTGCTGAAGTGTCACA
TAAAGTCTCAGGAGAATTTTCTCTTTTCTTTATGTGAGTCGTTGACTAAA
ACCAGCTTGCTAGCTCTTGTTTCTGCTTCTTTGTTCTTCGTTGATCCTGC
TCTGGCATTTAAGGGGGGAGGTCCATATGGAGCCGAAGTGACAAGGGGTC
AAGATCTTACAGGAAAGGACTTCAGTGGCAAGACTTTGATCAAGCAAGAC
TTCAAAACGTCTATATTGAGACAAGCCAATTTTAAGGGTGCCAAGTTACT
GGGTGCTAGCTTCTTTGATGCTGATTTAACAGGGGCTGATCTTTCAGATG
CTGATCTCAGAAGTGCAGACTTCTCATTGGCAAATGTGACAAAGGCAAAC
TTGAGTAATGCTAACTTGGAAGGTGCTCTTGCTACTGGCAACACATCTTT
CACGGGATCGAATATAACTGGAGCTGACTTCACCGACGTGCCTTTCACAG
ATGATCCCCGGCAATATCTTTGCCAACCTGCACATGGGGCAAATCCCACA
CCCGAAATGCAACCCGGGACACATTGCTCTTGCACTACAATCTCATTCCC
TTGGCACCTCCCCATCTGGCAAACACGACAGCAACGCCCTTACTTTTGCT
ACCTCACCACCTCCACTTTCCTTTCGCCTGAGTGAACCCCCTCCTGTCCT
GCACTTATGCTACACATCGATCTCCCTCTCATACCGGCCCTCACTATTTT
CTCATTTTCACCCATTTAAAAAACCCTATTCCCATTCTCCCTCGTAGCCC
ACCCCGCCACCTGTTTTATTTAGCACGAACATCTCATTTTCCTACGACTT
GGCCACT
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