EY660069

Overview
NameEY660069
Unique NameEY660069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig716 contig Csv1_Contig716:120..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 1
Query:   85 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNRKEGSAQGVLVGPAGSSE 501
            REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGVLVERTI EVLPAVQRNK+G+EEV+ +L E L  KKK++++FEAKYKIRI K E ++K+ GN+KEG+AQGVLVG A SS+
Sbjct:   11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE-DNKEGGNKKEGNAQGVLVGAASSSQ 148          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1
Query:  100 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 480
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1
Query:  100 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 480
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 1
Query:  100 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 480
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKSSSAGVLV 153          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_MOUSE (Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 1
Query:  100 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 480
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 52/112 (46.43%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   76 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 411
            +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+GGVLVERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF A YKI+I
Sbjct:    2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_DROME (Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   76 TERREP-VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 414
            TE  +P ++++ +   +  +R+E   + + +  LEM+  EH  VI  ++  DP RKC+R IGGVL ERT+ EVLP +  NK+ I + I  +   L+ K  E++ F+ ++ I+IR
Sbjct:    3 TESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIR 116          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_SCHPO (Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe GN=SPAC227.10 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   88 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 411
            +P  +QI+   Y S +S L QI  KI +LE +A EH LV++ +  +D +R+C+RMI GVLVERT+  V+P ++  +EGI+  +  L +     + E   F+   KI++
Sbjct:    4 QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_YEAST (Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN=GIM4 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  121 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 417
            Y   +  L ++ +KI EL  +  EH++VI  +K  +P+RKCYRMIGG LVE  +   LP ++  KE IE  I+++ E L    KE   ++   KI++ K
Sbjct:   12 YNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 110          
BLAST of EY660069 vs. ExPASy Swiss-Prot
Match: PFD2_CAEEL (Probable prefoldin subunit 2 OS=Caenorhabditis elegans GN=tag-355 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   88 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 411
            E   ++ V   + ++R +   I +++T +E E  E   V+  IK L+P +KC+R+I   LVE T+ +V+P +Q N   +  V  +LN+ L  K KE++  +  + IR+
Sbjct:   13 EQEEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRL 120          
The following BLAST results are available for this feature:
BLAST of EY660069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD2_ARATH1.496e-4971.22Probable prefoldin subunit 2 OS=Arabidopsis thalia... [more]
PFD2_HUMAN3.585e-2747.33Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 ... [more]
PFD2_BOVIN3.585e-2747.33Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV... [more]
PFD2_RAT4.682e-2747.33Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 ... [more]
PFD2_MOUSE4.682e-2747.33Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 ... [more]
PFD2_DICDI1.506e-2546.43Probable prefoldin subunit 2 OS=Dictyostelium disc... [more]
PFD2_DROME1.278e-1635.96Probable prefoldin subunit 2 OS=Drosophila melanog... [more]
PFD2_SCHPO2.180e-1637.96Probable prefoldin subunit 2 OS=Schizosaccharomyce... [more]
PFD2_YEAST2.041e-1438.38Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN... [more]
PFD2_CAEEL5.557e-1231.48Probable prefoldin subunit 2 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660069 ID=EY660069; Name=EY660069; organism=Citrus sinensis; type=EST; length=682bp
CCACGCGTCCGCCTAGGGAGGGCTCACGCACTTAAATTAGATTCAAGAAT
CAGAATCATGGCTGGCAGAGCTGAAACTGAGCGCAGGGAACCGGTAAATG
AACAAATAGTGGCAAATATGTACACATCTATGAGATCTGAACTAAATCAA
ATCTACTCGAAAATTACCGAACTGGAGATGGAGGCAAGTGAGCACTCATT
GGTTATTAATGCTATTAAGCCACTTGACCCTTCTAGAAAGTGCTACCGGA
TGATTGGAGGTGTGCTGGTGGAGAGAACAATCAGTGAAGTCCTTCCTGCT
GTGCAACGCAATAAAGAGGGGATAGAGGAGGTAATTGCAAGGCTCAACGA
GGCCTTGGCAGCGAAGAAGAAAGAAATTTCCGACTTTGAAGCTAAATATA
AAATTAGGATTCGAAAGCCTGAAAGTGAGTCCAAGGATGATGGTAACCGG
AAGGAAGGTTCGGCTCAAGGAGTCCTTGTTGGCCCTGCTGGTTCAAGTGA
GTGATAGGTGTTGTATTTTAATTCCACCGTGATTTCTTGAACTTGCTGGA
TGGAAGTATTTTGGATATTTATTACACCTGCTGTTAGAGAGCTGGGCCTG
CTAATGGAGTGTAACAGATATTGCTGAATGATAATTTGTGCTTGATATTT
CTGAATGTGTTTGTTTCAAAAAAAAAAAAAAA
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