EY660017

Overview
NameEY660017
Unique NameEY660017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2058 contig Csv1_Contig2058:548..1465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY660017 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.040e-66
Identity = 111/153 (72.55%), Postives = 125/153 (81.70%), Query Frame = 3 
Query:  201 RAFLPLKSTTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXXFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLV 659
            R FLPLK+  WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QI              FFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF GYA+GN  DQ  VPV+HL AGM+TLV
Sbjct:   54 RPFLPLKANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLV 206

HSP 2 Score: 38.1206 bits (87), Expect = 1.040e-66
Identity = 16/32 (50.00%), Postives = 18/32 (56.25%), Query Frame = 2 
Query:  659 NFASGGCVVGXXXXXXXXXXXXXHCGKMVWRR 754
            NFAS GCV+G             HCGKMVW+R
Sbjct:  207 NFASEGCVIGVPLLYLVASLTLVHCGKMVWQR 238

HSP 3 Score: 27.335 bits (59), Expect = 1.040e-66
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:   70 ALIALGPSLSLFVA 111
            AL+ALGPSLSLFV+
Sbjct:   10 ALVALGPSLSLFVS 23
The following BLAST results are available for this feature:
BLAST of EY660017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH1.040e-6672.55Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660017 ID=EY660017; Name=EY660017; organism=Citrus sinensis; type=EST; length=916bp
CTGGACGCCTGCGGTCCGGTCCGGAATTCCTCCACATCGGGGCGTNNGAG
TAGNGGTTCCCACAAAAGCGCGTTGATAGCGCTGGGGCCGTCTCTTTCTC
TATTCGTCGCTTTCACCCCAAAAAGCCTTTCTTGATCCTCACTGTCCTTT
CTAGTACATTGTTATGGCTTATAAGTCTGATTGTGCTGTCGGGGATATGG
AGGGCTTTTCTTCCTCTAAAATCAACCACCTGGTGGCCATTTGCACTACT
TATAATTTCATCTGTCGGATTCCAAGAAGGGCTTCGTGTTCTTTTCTGGA
AAGTTTACAAGAGGTTGGAAGACACGTTGGATGCTTTTGCTGACAGAGTT
GGAAAACCACGCTTATTTCTGACTGATAAGATGCAAATTGCTCTTGCTGG
TGGATTAGGCCATGGTGTGGCCCATGCTGTGTTTTTTTGTCTTAGCCTGT
TAACTCCAGCATTTGGTCCAGCTACATTTTATGTTGACAGATGCCCCCAG
ATGCCCTTTTTTCTTATTTCTGCAATCATTGCTCTTGCATTTGTTACAAT
TCACACTTTCTCAATGGTCATTGCATTTAATGGGTATGCTGAAGGGAATA
CAACGGACCAGTATTTTGTTCCTGTTGTTCATCTTGTGGCCGGAATGGTG
ACATTGGTAATTTTGCATCTGGTGGTTGTGTCGTTGGGATTCCTCTGCTC
TATATCCTGGNCAGCTTGATCCTGNTACACTGTGGGAAAATGGTGTGGAG
AAGATAACAGNCAGCTGAAGCATGCAGGGTAATTCTTAGTGATCCATAGG
CATTGGAAAGTCACTCTCAAATTTATAGCTCAGCTGAAACATGTATGTAC
TACACAATTGTATCTTGGGAAGGTCCTCAAAACCATTATTTTGGGAACTG
ACATCATACTAATTCA
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