EY660000

Overview
NameEY660000
Unique NameEY660000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9956 contig Csv1_Contig9956:249..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660000 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 77/209 (36.84%), Postives = 109/209 (52.15%), Query Frame = 1
Query:  232 DIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADL-SKCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDXQLCPLSATDLMWDLPLPKGADRDHEYCNP-------------------IAGVELTIDRTAA 798
            D P     P+II+FHGG ++  SA + I+ + C +       +++SV+YR APEHR P A+DD   +++WV  Q    P++R   D  ++ FL G SSGG IA+H  +RA D        VK+ G +L    FGG +RTESE+R+       L   D  W   LP+ ADRDH  CNP                   ++G++LT DR  A
Sbjct:  106 DAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQ----PFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD------EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLA 304          
BLAST of EY660000 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.457e-29
Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   97 DGSLTRH-NKF--PTVPPSASITDQLALSKDVPLNPQNKTFLRLFKPKDI---PPNTKL---------PLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDXQLCPLSATDLMWDLPLPKGADRDHEYCNP 759
            DG+  RH  +F    VP +A+  + +  S DV ++ Q     R+++P D    P  T L         P+I++FHGG +   SA++ I+   C +L     A+++SV+YR APE+R P A+DD    ++WV   +    WLR   D   + FL G SSGG I ++  +RA++      S + ++G +L  P FGG +RTESEKR+       +   D  W   LP+G DR+H  C+P
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGV-FSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE------SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP 263          
BLAST of EY660000 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  211 LRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDXQLCPLSATDLMWDLPLPKGADRDHEYCNP 759
            L L KP  +     +P++I+FHGG +   SA++ I+   C +L      +++SVDYR +PEHR P A+DD   ++ WV+ +     WL+   D +   +L G SSGG IA++  +RA +        VK++G +L  P FGG +RT+SEK +       +   D  W   LP+G DRDH  CNP
Sbjct:   94 LELTKP--LSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV----WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN------EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNP 265          
BLAST of EY660000 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.947e-26
Identity = 69/191 (36.13%), Postives = 103/191 (53.93%), Query Frame = 1
Query:  196 QNKTFLRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTESEKRMIDXQLCPLSATDLMWDLPLPKGADRDHEYCNPIA 765
            Q  + L L KP D      +P+I++FHGG +   SA++ I+   C +L      +++SV+YR APE+  P A+DD   ++ WV  ++    WL+   D     FL G SSGG IA++  LRA +      S + ++G +L  P FGG +RTESEK +       +   D  W   LP+G DR+H  CNP +
Sbjct:   90 QPPSILDLEKPVD---GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE------SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFS 267          
The following BLAST results are available for this feature:
BLAST of EY660000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ1.539e-3136.84Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH2.457e-2934.60Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH2.717e-2836.96Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.947e-2636.13Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660000 ID=EY660000; Name=EY660000; organism=Citrus sinensis; type=EST; length=843bp
ACACGGGAGGCGTNCGAACAGAGTTTTCCAAAAGGGAGAAGAAAAATTCA
ATGTTCCGTAGACCCTTTTGAGTTACTCATTATCTCTCTCAACTCGGACG
GCTCACTCACGAGACACAACAAATTCCCCACTGTTCCGCCATCGGCATCG
ATAACCGACCAGCTCGCCCTCTCCAAAGATGTCCCACTCAACCCCCAAAA
CAAAACTTTCCTTCGCTTATTTAAACCCAAGGATATTCCCCCCAACACAA
AGCTCCCTCTTATTATATACTTCCATGGCGGCGGCTACATTTTGTTCAGT
GCTGACGCTTTCATTTTTCACAACTCGTGCTGCCAACTGGCGGCTTTTAT
CCCCGCTTTAATCCTGTCGGTTGATTACCGTCTCGCCCCCGAACACCGCC
TTCCTGCAGCCTTTGATGACGCCATGGAATCCATCCAGTGGGTCCGCGAC
CAGGCTCTTGGTGACCCGTGGCTGAGAGATTACGCCGATCTATCCAAGTG
TTTTCTGATGGGCTCCAGCTCTGGCGGCGGCATCGCTTACCATGCCGGGT
TACGTGCATTGGACTTGGATGCTGATCATCTTTCGCCGGTGAAGATCGTA
GGGCTCGTGCTCAATCAGCCATTTTTCGGTGGGGTCCAGAGGACTGAATC
GGAGAAAAGAATGATCGACGANCAGCTCTGTCCGTTGAGTGCAACGGATC
TCATGTGGGACCTGCCGTTGCCGAAAGGTGCGGATCGCGATCATGAATAT
TGCAATCCGATCGCAGGTGTGGAACTAACGATAGATCGGACGGCTGCCAA
GTAGTTTTGTGGGGAGACCCGAAGGGGACCCTTTGATCCACAA
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