EY659995

Overview
NameEY659995
Unique NameEY659995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659995_ssr281 microsatellite EY659995_ssr281:281..295. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659995 vs. ExPASy Swiss-Prot
Match: TCP3_ARATH (Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.392e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  658 EIVQVGGGHIVRSTGAKRRHMQVYTSKGPRDRRVRLSAP 774
            EIV+V GGHIVRSTG K RH +V T+KGPRDRRVRLSAP
Sbjct:   34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAP 72

HSP 2 Score: 25.0238 bits (53), Expect = 3.392e-11
Identity = 13/38 (34.21%), Postives = 25/38 (65.79%), Query Frame = 2 
Query:  785 FYDVQNRVVYYNPTK-LKIALSEGKSSLDS-S*ASPWH 892
            FYDVQ+R+ +  P+K +   +++ KS++D  +   PW+
Sbjct:   77 FYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQLPPWN 114
The following BLAST results are available for this feature:
BLAST of EY659995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TCP3_ARATH3.392e-1179.49Transcription factor TCP3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659995 ID=EY659995; Name=EY659995; organism=Citrus sinensis; type=EST; length=905bp
TCATCATCGAGGCGTCCGCGGACGCGTTGCCTAAAAAATGGGTGGGGNTG
GTGATGACAAAAGATCTTTAATTCCTTCTCTGTCTAACCCCTGCCACCCT
TTGTAGAAGCATCAACCGCCCTCACAAGGTGTGAGATTTTGTGATGGTGG
TGGTGCTGTTGGGGCATGCAATCTGGAGAATGCAATGTCAGAGTTTTTGT
TAGGATCCTCTGTTGTTTGCAGTAACAGAAGTACCGGCTTTCAGGGTGAT
GGCAGTTGGAGCATGAAGAGCAGCAAGCACACAACAACAACAACAGCAAC
AACAGCTAGAGTGAGAGGCCAAGCAGCCAAAGATTTTGACCACTACAAGA
AAACTGTAAGAAAGCAAATTGCAAGAGCGAAGCCTGAAGGTCTAGGAATC
TGGGTTTCCAGAGTAATCCTCAGCATCCTCAGAAGCCCACCCACCAAATC
ACAAACCTAATACCACAAGAAACAACACTACAACAAAATCCTGAAACTGC
AAGCACCAACACCACATATTATCAGAGCCAACAACCATTTGGGCAAGCCA
TAATAAATTCATCACACCAAACACAAGTACCATACAACAAAGAGTCACTG
GAAGATTATCCAAATTACAATAGAGTAAGAAGATTGGGAATGAAGGGCAC
TGAAAGAGAAATTGTTCAAGTCGGAGGAGGTCACATTGTTCGATCGACAG
GGGCGAAAAGACGCCATATGCAAGTTTACACATCAAAAGGTCCGAGAGAT
CGAAGGGTTCGTTTGTCAGCTCCCCTGCTATTAATTCTATGATGTTCAAA
ACCGGGTTGTTTATTACAACCCCACAAAGCTGAAGATTGCCTTATCAGAA
GGAAAATCTTCATTGGACAGCTCCTGAGCTTCCCCCTGGCACCGAGTACT
AAAAC
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