EY659992

Overview
NameEY659992
Unique NameEY659992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.448e-41
Identity = 86/160 (53.75%), Postives = 116/160 (72.50%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 563
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   18 LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.502e-41
Identity = 84/160 (52.50%), Postives = 115/160 (71.88%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 563
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL E  + KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   19 LQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.186e-41
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 3
Query:   96 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 563
            FL L  +LK   R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE  S+ EAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   15 FLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.386e-41
Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFRLNWGKLGLQKFVSGEK 614
            + F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL +G R KEI  LW EYE  S+ EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF  +   LGL K ++ E+
Sbjct:    5 LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFH-HPEVLGLLKSLNEER 178          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.437e-38
Identity = 76/161 (47.20%), Postives = 114/161 (70.81%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFR 566
            + F+ L  +LK   R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL +  +  E+ +LW EYE   TAEAK VK+ D+ EMILQA+EYE  + +   L++F+ STAGKF+
Sbjct:   15 LQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.269e-37
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKF 563
            ++F  +C +LKT KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK EMILQA EYE      E    L+ FF ST GKF
Sbjct:    5 LEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKF 173          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.025e-35
Identity = 82/162 (50.62%), Postives = 108/162 (66.67%), Query Frame = 3
Query:   90 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK 560
            + FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL++EYE  ST EAK VKD DK EMI Q  EYE +    KDL +F  + AGK
Sbjct:   10 VPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGK 168          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.229e-32
Identity = 71/154 (46.10%), Postives = 106/154 (68.83%), Query Frame = 3
Query:   96 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL----GEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEF 539
            FL++   LKT +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ +     E A ++EI + W+ YE+ +  E + VKD DK EM++Q  EYE +    KDL++F
Sbjct:   32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESA-SREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQF 183          
BLAST of EY659992 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.742e-31
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 3
Query:   96 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GEGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTA 554
            FL++  +LK  +R G++   +   ESI+DHMYR+ ++ +++ D   ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C  L        AKEI + W+ YE  ++ EA+ VKD DK EM++Q  EYE E    K+ ++FF + A
Sbjct:   51 FLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA 207          
The following BLAST results are available for this feature:
BLAST of EY659992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN1.448e-4153.75HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN5.502e-4152.50HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE7.186e-4154.43HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_DANRE9.386e-4149.15HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
HDDC2_XENLA7.437e-3847.20HD domain-containing protein 2 OS=Xenopus laevis G... [more]
HDDC2_DICDI1.269e-3751.76HD domain-containing protein 2 homolog OS=Dictyost... [more]
YC0H_SCHPO2.025e-3550.62HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
YGK1_YEAST1.229e-3246.10HD domain-containing protein YGL101W OS=Saccharomy... [more]
YB92_YEAST6.742e-3144.30HD domain-containing protein YBR242W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659992 ID=EY659992; Name=EY659992; organism=Citrus sinensis; type=EST; length=928bp
AAAGAGGCGTNCGCCGGNGGTGTTGCCTCAATAATGTCGCTTCCTCATCT
GTTAACGGCGCTGCTTTCTCTTCTTCCTCTTCGCCCGTGATCGACTTCCT
CTCCCTCTGCCACCGCCTCAAAACAACGAAGAGAGCAGGATGGGTAAAGA
GAAATGTTAACAATCCAGAATCGATAGCTGATCATATGTACAGAATGGGA
TTGATGGGTCTCATTATGGCTGACATTCCTGGCATTGACCGAGACAAGTG
CATTAAGATGGCAATTGTTCATGACATTGCGGAAGCTATTGTTGGGGACA
TTACCCCTTCAGATGGAATTCCAAAGGAAGAAAAGAGTCAACGAGAGCGA
GAAGCTATAACCTACATGTGCAAACTATTAGGAGAAGGGGCAAGAGCCAA
GGAAATAGATGAGTTGTGGATGGAGTATGAAGAAAATTCTACTGCAGAGG
CCAAAATAGTCAAGGACTTTGACAAGGCGGAGATGATACTTCAAGCGGTA
GAGTACGAAAATGAGCAAGGGAAGGATTTGGAGGAGTTTTTCCAGTCAAC
TGCTGGAAAGTTCAGACTGAATTGGGGAAAGCTTGGGCTGCAGAAATTTG
TTTCAGGAGAAAAAGTGAACTAATTTTCATAAGAAGGCCTTAGTTGAAAT
TTTCAGATAGTTTTTGACTTGTTCATGTTACTCGAGGGCCAATCCCCTGT
CTGAATATTGGCTCGATCTAATGGGTAATTCATTATAGCAAAATTTGCAG
CAGCTAGTTTGTAAGCCTCTATCCCTTTACCTCTCTGGAGGGATATGGGG
TTTATTATATTATTATTTTTGGGAAAAAAAAAAAAAGGGCGGCGCTCTAA
GGATCCAGGTTACGACGCGTGCTGGAAAGCCTAACTCTTCATAGGGCCCC
AAATCATTCCCGGCCGCGTTTTCAAGGG
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