EY659980

Overview
NameEY659980
Unique NameEY659980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659980 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.125e-12
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 3 
Query:  531 RSMVSFEDVHLANGSNNRPFFRPFDRDENGDEDL--DEYFHQ--PEKKRRLTVDQVQFLEKSFEV*NKLEPERKINWEKTL 761
            RSM++ E+      S  RPFF       +  EDL  D+++    PEKKRRLT +QV  LEKSFE  NKLEPERK    K L
Sbjct:   34 RSMMNMEET-----SKRRPFF-------SSPEDLYDDDFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKL 102

HSP 2 Score: 31.5722 bits (70), Expect = 5.125e-12
Identity = 19/42 (45.24%), Postives = 22/42 (52.38%), Query Frame = 2 
Query:  734 KENQLGKDLGLQPXQVAIWI-------KTAGLGGD*QLEKDT 838
            ++ QL K LGLQP QVA+W        KT  L  D  L K T
Sbjct:   94 RKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKST 135
The following BLAST results are available for this feature:
BLAST of EY659980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HAT5_ARATH5.125e-1248.15Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659980 ID=EY659980; Name=EY659980; organism=Citrus sinensis; type=EST; length=921bp
TTNNNNNNNAAATGGTAGCCTGCAGTACGGTCCGGAATTCTTCGTAAGGA
GGGNGTNNGGNAAAAATTGCGTAAAAAGGGGNTAATATTNANTTNNATTT
NGTATTNGTNTTATTATTGTTTGCTCTGCTATATAAAATTTNAAATTTCA
CACTTCTCCTGAAACCTCTCACGAAACACTCTTTCAAATCCTTATATTCT
GAGTGATGGGTATGAGCAGCCGCTGCTCCCACACATCTCACATAACCGAG
ATCATAATCACCAGCTTCTTTCGTCATAAGTCTTAAATTAAATTTCTTCT
CGACTGTTGAATCATCGCATCATCTTTAGCGATGGCTGCTTAAAAGATTA
AGAATATTAGTTTTAAGTTAAATGGCGGGTGGGAGGATGTATAATCAAAA
TAGTTCTAGTGGTGGTGGTACTTCAAGTCTGTCCTTTCTGATTCAAAGAC
AAAAGGGTTCTTGCTCTAACTCTCAGAATCTTGATGCTTCGTTCCTCTCT
GGACCTTCTCCTTCTCCTTTTCTTGGACCAAGATCCATGGTGAGCTTTGA
AGATGTGCACTTAGCAAATGGATCCAATAACAGGCCATTTTTCCGCCCAT
TTGATCGTGATGAGAATGGGGATGAGGACTTGGATGAGTACTTTCATCAA
CCTGAAAAGAAAAGACGGCTCACGGTTGATCAAGTGCAGTTTCTTGAGAA
AAGCTTCGAGGTATAGAACAAGCTTGAACCCGAAAGGAAAATCAACTGGG
AAAAGACCTTGGCTTGCAGCCTANACAGGTTGCGATTTGGATCAAAACCG
CGGGGCTCGGTGGAGACTAACAGCTCGAGAAAGATACGATGTATGCAAAA
CAGCTAAATAGCCTTTAAGGCGATATGACATTTTTTTCAGGAGAAGAAAA
GCTAAAAGTGAGGTAAATTTG
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