EY659948

Overview
NameEY659948
Unique NameEY659948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659948_ssr51 microsatellite EY659948_ssr51:51..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659948 vs. ExPASy Swiss-Prot
Match: QCR7_SOLTU (Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.207e-44
Identity = 91/121 (75.21%), Postives = 101/121 (83.47%), Query Frame = 2 
Query:   89 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKAEREALGALPLYQRTIP 451
            +S  + L+DPKKN LAA HMKT+S RLRN+GLR            +KEAL+RLPREIVDARNQRL RAMDLSMKH+YLPEDLQAMQTPFRNYLQ+MLALVKRE AEREALGALPLYQRT+P
Sbjct:    3 SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDARNQRLLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALVKRESAEREALGALPLYQRTLP 123
The following BLAST results are available for this feature:
BLAST of EY659948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR7_SOLTU6.207e-4475.21Cytochrome b-c1 complex subunit 7 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659948 ID=EY659948; Name=EY659948; organism=Citrus sinensis; type=EST; length=861bp
ACAGAGGGGNGTNCGCGGACGCGTTGCTTAAAATGTAATCAGCGTTGCAA
AGCGAGCGAGCGAGCGAGCGAACACGAAAGTAAAACTGGCGTCTCTTTTG
CAGTCGCTATTAGATCCAAAGAAGAACTGGTTAGCAGCCCAGCACATGAA
AACGATCTCTAAACGTCTCCGTAATTTCGGGCTCCGCTACGACGATCTGT
ACGATCCCTACTACGATTTGGACATCAAGGAAGCGCTCGATCGGTTGCCA
CGTGAGATCGTTGACGCCCGTAACCAGCGTCTCAAGCGCGCCATGGACCT
CTCCATGAAGCACGAGTACCTCCCTGAAGATCTTCAGGCTATGCAAACAC
CGTTTAGAAACTACCTACAAGATATGCTGGCCCTTGTGAAAAGGGAGAAG
GCAGAACGTGAAGCATTGGGAGCTTTGCCTCTCTACCAACGCACTATTCC
ATAAGCCATCTTAGTGTGTTATGTAGCCAGTGCTGAACTGAGTGAATCTG
TCAATTGATGCAGACTGCTTTTGGAGCTGGTTTTTTTTTTTTTTGTCATT
TGTGTTAGTATGTCAATGCTGTTTCTACTTGGTTGTCATTTTACTGGCCA
TTTCGCAATAAATACAGACGACCAAACTTAAAATTTCCGTTTTATGTTTG
CCTTGCTATATAGATTCTCAATATTCTTGCTNAATGACAACTTGAAAAGT
ACAGCAAGATTGGATTGTCACCATTGTAGTTTCCACGATTGTCCTCGCAG
GATGATCAGTGTCTATGATATATCTGAGGCAACATGTGACGGTCACTTGG
NTGCTCATTGGGTATCAGATCCTTGAAGACAATGGATTACAATCCCCCTC
AAAAAAAAAAA
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