EY659925

Overview
NameEY659925
Unique NameEY659925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7601 contig Csv1_Contig7601:884..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659925 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.875e-20
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   37 CASNPGNWWEANNYFALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECFA 195
            C SNP NWWE   Y +L A+EARRYRWVR+NHM+YDYCTD+SR+PVPPPEC A
Sbjct:  240 CPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 292
[Close]
BLAST of EY659925 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.127e-19
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   37 CASNPGNWWEANNYFALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECFAGI 201
            C +N  NWWE + Y  L+ +EAR YRWVR+NHM+YDYCTDKSR+PVPPPEC AGI
Sbjct:  239 CPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293
[Close]
BLAST of EY659925 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 CASNPGNWWEANNYFALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 189
            C +    WW+   +  L A++ RR RWVR  + +Y+YCTDK+RYPVPPPEC
Sbjct:  240 CNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVPPPEC 290
The following BLAST results are available for this feature:
BLAST of EY659925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
XTH6_ARATH3.875e-2073.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH1.127e-1969.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.927e-1150.98Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659925 ID=EY659925; Name=EY659925; organism=Citrus sinensis; type=EST; length=508bp
CACAGGGGCGTNCGGNCCAGTTCTTGCAACAAAAGGTGTGCCTCGAACCC
AGGTAACTGGTGGGAGGCAAATAATTATTTTGCCCTCACCGCCATGGAAG
CAAGAAGATACAGATGGGTTCGTCTCAACCACATGATCTATGATTATTGC
ACTGATAAATCAAGATACCCAGTACCCCCACCGGAATGCTTTGCCGGCAT
ATAAATTCAACCCGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCC
GTATCATATCATGTATATTACTTCACGTACACGTCCTTTGTATTATTCCC
TATTCGTGTGAAAAGACTTATACGCATATCAAGGGAGGGGCGGGAGGGGA
AATAAACATTGTGTGCATTTAAATGTAATTATGGGAGTGGGAAATATGTG
GGTTTTCTGCTCTGCTTGTACCATATATAAGTCTGAATTTGATGCACAGT
ATTCTGTGCCAATAAAAGCTTCTTCATAATTGTGAAAAAAAAAAAAAAAA
AAAAAAAA
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