EY659919

Overview
NameEY659919
Unique NameEY659919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659919_ssr369 microsatellite EY659919_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659919_ssr381 microsatellite EY659919_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 6.113e-59
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRXG*FFQSEIPSVEWGTPWSRTAE 789
            SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ WSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKR   FF  +  SVEW TPWS+TAE
Sbjct:   74 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAE 181          

HSP 2 Score: 43.1282 bits (100), Expect = 6.113e-59
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  815 GSPGGKVFDPFMLAGTIKDGVYIPD 889
            G PGGK FDP  LAGT+ +GVY+PD
Sbjct:  191 GYPGGKFFDPLALAGTLNNGVYVPD 215          

HSP 3 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 42/71 (59.15%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   44 TSGAVLNGLGSSFINAGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGS 244
            TS AVLNGL SSF+  G KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGS
Sbjct:    4 TSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGS 74          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 7.971e-59
Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRXG*FFQSEIPSVEWGTPWSRTAE 789
            SLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR   FF ++  S++W TPWS+TAE
Sbjct:   74 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAE 181          

HSP 2 Score: 43.1282 bits (100), Expect = 7.971e-59
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  815 GSPGGKVFDPFMLAGTIKDGVYIPD 889
            G PGGK FDP  LAGT+ +GVY+PD
Sbjct:  191 GYPGGKFFDPLALAGTLNNGVYVPD 215          

HSP 3 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   53 AVLNGLGSSFINAGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGS 244
            AVLNGL SSF+  GKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGS
Sbjct:    8 AVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGS 74          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.474e-57
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRXG*FFQSEIPSVEWGTPWSRTAE 789
            SLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQ W+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKR   FF  +  SVEW TPWSRTAE
Sbjct:   79 SLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAE 186          

HSP 2 Score: 41.5874 bits (96), Expect = 1.474e-57
Identity = 18/25 (72.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  815 GSPGGKVFDPFMLAGTIKDGVYIPD 889
            G PGGK FDP  LAGTI +GVY PD
Sbjct:  196 GYPGGKFFDPLSLAGTISNGVYNPD 220          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 720
            SLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +R
Sbjct:   81 SLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRR 168          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 720
            SLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +R
Sbjct:   81 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRR 168          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGI------PWFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRXG------*FFQSEIPSVEWGTP 771
            SLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +     +   F    +L   + +  W + K  G       F Q  +P+ E G P
Sbjct:   69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185          
BLAST of EY659919 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  466 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQTWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 720
            SL GD GFDPLGL +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +R
Sbjct:   70 SLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRR 157          
The following BLAST results are available for this feature:
BLAST of EY659919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CB4A_SOLLC6.113e-5987.04Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC7.971e-5986.11Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL1.474e-5785.19Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY7.087e-1443.96Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC7.836e-1341.76Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA2.521e-1135.04Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH9.579e-1139.56Chlorophyll a-b binding protein 4, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659919 ID=EY659919; Name=EY659919; organism=Citrus sinensis; type=EST; length=889bp
TTCTAAAAACGGCGCGTNCGAGATCATATCTCGAAAAGATGCAACATCCG
GGGCTGTGTTAAACGGATTGGGTTCTTCATTCATAAACGCCGGCAAGAAG
AGCCAGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTC
AGTTGTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTA
AAGGTGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCGTAAGTA
TTCTCTCTATCTAATCTATTCTTTGCTTGGTTAATAATACATCATATGTC
TCGTCGGCCTCAAATACAACTAACTCAAACTCATGTTAGAACAGTGCCTA
AACGCCGAACAAGCTAAGAATCAATCAATCTATCTATCTATCCTTCTTGT
TTTTTCTCACATTTTAATATTCTACCATATAACTTCGTGCGCGTCTGGGG
CGTGTCTGTGTGTTTAGTCTCCCAGGTGACTACGGATTCGACCCACTTGG
GCTTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGA
TCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCGTCGGACAG
ACGTGGAGTGGGATTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCAT
AGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGG
GTTGGGTTGAGAGCAAGCGGNNGGGGTGATTTTTTCAATCTGAAATCCCA
TCAGTTGAATGGGGCACACCATGGTCAAGAACTGCTGAAACTTTGCCNAT
GCGACTGGTGAACAGGCTCCCCTGGTGGNAAAGTTTTTGATCCCTTTATG
TTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGAC
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