EY659890

Overview
NameEY659890
Unique NameEY659890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.167e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 456
            RTDSA+KF WFF+FYL+HIGFCI AA+APP+VF GKSLT
Sbjct:  184 RTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLT 222          
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 456
            RTDSALKF WFF  YLIHIGFCI AAIAPP+ FHGKSLT
Sbjct:  178 RTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLT 216          
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 456
            RT+SA  F WFFL YLIHIGFCI AAIAPP+VFHGKSLT
Sbjct:  187 RTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLT 225          
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.220e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSL 453
            RTDSAL F WFFLFY++HI FC+FAA+APPVVF GKSL
Sbjct:  185 RTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSL 222          
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 456
            RTDSALKF WFF  YL HI FC+FAA+APP++F GKSLT
Sbjct:  178 RTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLT 216          
BLAST of EY659890 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:  340 RTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 456
            RTDSA  F WFFL Y++HI FC+FAAIAPPV+F GKSLT
Sbjct:  195 RTDSAFSFGWFFLCYMLHIAFCVFAAIAPPVIFRGKSLT 233          
The following BLAST results are available for this feature:
BLAST of EY659890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SCAM_PEA6.167e-1379.49Secretory carrier-associated membrane protein OS=P... [more]
SCAM4_ARATH1.052e-1284.62Secretory carrier-associated membrane protein 4 OS... [more]
SCAM6_ORYSJ3.060e-1282.05Secretory carrier-associated membrane protein 6 OS... [more]
SCAM3_ARATH5.220e-1278.95Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH1.519e-1174.36Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ORYSJ2.591e-1174.36Secretory carrier-associated membrane protein 5 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659890 ID=EY659890; Name=EY659890; organism=Citrus sinensis; type=EST; length=903bp
TTCTAGACACAGGCGTCCGGTGTGGAAAGTTGCCTATGATAAAACCTCGC
CCAAATTGCCAGTCTATTTAACTGTGTCACTTGAACATTTTACATTTTGA
TTTTTCCTGTTTATATGGTTTGTTCTCCCAGTTAAATGTTTCTTTTTTAA
TTTTTGGATGATCATTTCATTGGGTGGTAAAACGCATGTCCGTTAACTGG
TGAGAGGGAGCAATATATAGTGACACTGTTGTGAATATAGTTAGAAAAAA
AAAATGCTTGGATAATGTGTATTTAACCTTTGAAAATGTTGTTAGCATGA
GAATCATGTATTCAATCAGCTAAGCCTGTCTGAAATTGCAGGACGGATAG
TGCATTGAAGTTCAGCTGGTTTTTCCTGTTCTACTTGATCCACATCGGTT
TTTGTATCTTTGCGGCTATTGCTCCTCCTGTTGTCTTCCATGGGAAGTCA
TTGACGTAAGTATCTTAGTTTTTTAATTTTCTCTCTCAGTTCTAAGAACC
ATGGCGTTAACCATTGTAAATTTGGCTTGGATTTTTTTTTTTGGCCCCTG
TGGCAGAGTATAAAATTTAGCTTTTATTAGATTGAAATTATGGGAAAACT
ATAATAGTTTTGTGGATTTTTATTGGCTTTGGTCTCCCTGTGTCCTAGAA
TCATGATTGCTGACCTTGCTGCTGAAAACGTTTGAAGCCATTTCCTGNTT
TTGTCCACTTCTATTTTATCTGTTTACAGATTCCCTTTGTTTCCATTGCA
GGGGTATCCTAGCGGCAATTGATGTCATTTCTGATTCTCTATTTGGCCTG
GGGAAGNTGNNGTGATCATCTTGCATTTATGNNCTTTATTAGCAATGGAC
AGGGGGATTGAGCATTTTACTCCTTGGCTGGCTACTTTGGAACATACTCT
GAA
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