EY659882

Overview
NameEY659882
Unique NameEY659882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7329 contig Csv1_Contig7329:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659882 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.814e-40
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = 2 
Query:   71 SMAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 565
            S+AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct:    4 SVAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
The following BLAST results are available for this feature:
BLAST of EY659882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH5.814e-4056.55Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659882 ID=EY659882; Name=EY659882; organism=Citrus sinensis; type=EST; length=757bp
AGTGGACGCCTGCAGTACGGTCCGGAATTCTCTACAAAGACGCGTCCGGA
AAGAACCTCCCAAAAAAAGATCAATGGCAGCGACGGCGTACGCGGCGGTG
TTAACTCCACGTGTCCCCTCAACCACCACCGTCAAAGTCAAATCTTCTCA
CTGCTTTGCTCTTCCCTGCCTCCCTCCTCGTTCGTCAACGTCACCATTCT
CTTCTTCCATTAAACAAGTTTCAGAGTCGAGAAGGTTTCCTTTGCTTCAG
GTTAGAGCCTCTTCCTCAGAAGAGACATCCACAGTTGATGCAGATGAACT
TTTTTCAGACTTGAAGGAAAAGTGGGATGCCGTTGAAAACAAGTCCACGG
TACTTCTCTATGGAGGTGGGGCAATAGTGGCTGTTTGGTTATCCTCAACT
ATTGTTGGTGCCATCAATTCAGTGCCTTTGCTTCCCAAACTCTTGGAGTT
GATTGGACTTGGTTATACTGGATGGTTTGTCTACAGATACCTTCTCTTCA
AGTCAAGCAGAAAAGAACTAGCCACGGATATTGAAGCACTGAAGAAGAAG
ATTGCTGGAACTGAATAGATTGTACATTCTGGAGGCAATTCATGTTTGTC
CCTGATAGTCATTTATTTTGGTCCTCTATCATTGCATATGAGGCACTTGT
ATCCTGTAGAGTANGCTGCGTACGGATTCGTTTTATCCCTGTATTTTCCA
GTATATCCCTGGAATAAGAGATTTGAGCAAGTTATGTGTAAAAAAAAAAA
AAAAAAG
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