EY659873

Overview
NameEY659873
Unique NameEY659873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659873_ssr492 microsatellite EY659873_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:128..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  133 CILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   15 CMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A  KL   + LC++V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAAC CLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.801e-34
Identity = 64/114 (56.14%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A  KL   + LC++V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ AC CLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 66/114 (57.89%), Postives = 84/114 (73.68%), Query Frame = 1
Query:  100 AAFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A  KL   + LC+ V+  V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ AC CLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAAC CLK A+ SI G+N N AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 66/113 (58.41%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            A K+   ++LC++V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:    4 AGKIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            + KL   ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN   A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  103 AFKLERALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            + KL   ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN   A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  124 LLLCILVTAPVTNAI-TCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRV 438
            ++  +L T P   A+ TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N NAAAGLP +CGV+IPYKISP TDC+RV
Sbjct:   13 VMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of EY659873 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  166 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACYCLKQAYRSIPGINANAAAGLPRQCGVSIPYKISPNTDCSRVR 441
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAAC CLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of EY659873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP_HELAN5.643e-3566.02Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU9.626e-3557.89Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV2.801e-3456.14Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO9.961e-3257.89Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI2.219e-3169.57Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_TOBAC8.432e-3158.41Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_GOSHI4.185e-3056.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI4.185e-3056.52Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_DAUCA1.590e-2957.94Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUPE3.543e-2963.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659873 ID=EY659873; Name=EY659873; organism=Citrus sinensis; type=EST; length=653bp
TGAGGTACCGGACCGGAATTCGTCCCTACCGGGCGCGNNCNGAAAAGANC
TGCTATAAAAGGGGTAANNAAGNAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTTTTAAGCTTGAAAGAGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCTACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAT
CAACGCTAATGCTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTC
CTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGA
GTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAA
ATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTG
TGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATT
AAATATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAAA
AAA
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