EY659871

Overview
NameEY659871
Unique NameEY659871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:1064..1993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.653e-45
Identity = 87/119 (73.11%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQCS 396
            RHGYFHVVNNDYTHW++YAIGGSANPTINSQGNRY AP N FAKEVTKRVDT AS WKGWNWRSEGDLL NGAYFT                  KSSS+VG ITS AGAL CR+ RQCS
Sbjct:  312 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCRRGRQCS 430          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.977e-42
Identity = 81/118 (68.64%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSA PTINSQGNRY AP++ FAKEVTKRV+T AS+WK WNWRSEGDLLLNGA+F P                 K SSMV +ITS AGAL CRK R C
Sbjct:  353 RHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.312e-39
Identity = 76/118 (64.41%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSA PTINSQGNR+ AP+N FAKEVTKR  T  S+WK WNWRSEGDL LNGA+FT                  KSSS+VG++TS +GAL CR  R+C
Sbjct:  299 RHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC 416          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.957e-38
Identity = 74/118 (62.71%), Postives = 84/118 (71.19%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSANPTINSQGNR+ AP   F+KEVTK  D   S+WK WNWRS GDLLLNGA+FTP                 K SS+VG +TS +GAL CRK  +C
Sbjct:  291 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.957e-38
Identity = 74/118 (62.71%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSANPTINSQGNR+ AP N FAKEVTKRV     +W  WNWRS+GDL+LNGAYFT                  KSSS+VG +TS +GAL CR    C
Sbjct:  301 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCRIGTLC 418          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.360e-38
Identity = 76/118 (64.41%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSA+PTINSQGNRY AP N FAKEVTKR      QW+ WNWRSEGDL LNGA+FT                  KSSS+VG IT  AGAL CR  R+C
Sbjct:  300 RHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCRGGRRC 417          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.820e-37
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW +YAIGGSANPTINSQGNR+ AP N  AKEVTKR+DT  ++W  WNWRSE DLL+NGA+FTP                 K +SMV +IT+ AGAL+CR+ + C
Sbjct:  335 RHGYFHVVNNDYTHWKMYAIGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTP-SGEGASGDSQTLSLPAKPASMVDAITASAGALSCRRGKPC 451          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.124e-36
Identity = 72/118 (61.02%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW +YAIGGSA PTINSQGNR+ AP +   KEVTK  D   S+WK WNWRSEGDL LNGA+FTP                 + SS+V S+TS AGAL CRK  +C
Sbjct:  291 RHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.124e-36
Identity = 70/118 (59.32%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW++YAIGGSA+PTI SQGNR+ AP   F KEVTK  D   S+W+ WNWRSEGD+LLNGAYF                   + SS+VGSIT+ AG L+CR+ R+C
Sbjct:  292 RHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
BLAST of EY659871 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.961e-36
Identity = 71/118 (60.17%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   40 RHGYFHVVNNDYTHWDLYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 393
            RHGYFHVVNNDYTHW +YAIGGSANPTINSQGNR+ AP N FAKEVTKRV +   +WK WNWRS+GDL+LNGAYFT                  K +S+V  +T  +GAL CR   +C
Sbjct:  323 RHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCRIGMRC 440          
The following BLAST results are available for this feature:
BLAST of EY659871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH1.653e-4573.11Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH4.977e-4268.64Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH2.312e-3964.41Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH1.957e-3862.71Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH1.957e-3862.71Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH4.360e-3864.41Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH4.820e-3761.86Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL5_ARATH3.124e-3661.02Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH3.124e-3659.32Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH6.961e-3660.17Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659871 ID=EY659871; Name=EY659871; organism=Citrus sinensis; type=EST; length=924bp
ATCATCGGGGCGNNNGNTCATTCAGTTACAAAAAAGGGGAGACATGGTTA
TTTCCATGTGGTGAACAATGACTACACTCACTGGGACCTGTATGCCATTG
GTGGAAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAATGCT
CCATTGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAGCTGC
AAGCCAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTGCTGA
ACGGTGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTATGCT
CGTGCTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTGGATCCATTAC
TTCTGGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCATAGT
ATTCATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCTGTTT
TGTTTTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTATCCAC
AATCTGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATATTTTG
ACAAGTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTTTGTT
TATCAGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAACAAACATT
TGCATTCCCAGAAGCANGTGCGGAAGTNGTGNTCATTTTATTTTCCCTCT
TTGGCCTCTTTTTCAGCCTCATTCTCATTTCCTTCTACTAGCACTTGNCT
ATTTGTGTCCAGTGTCAGTCAGCTGTCAACTGTCAAATCTGGGCTCTCCA
CATACTCTCTTTTCATTTTTGGCTTTTGGGTTAATAGGGCCGAATGATTT
TGTGCTTTTTTCTCCCGCTCCCTTGTGGGGCCAGNCCTAAACCAACGNAT
TTGATGCAAAACTTGAATATTAAA
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